Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02280 ATGATGTCTTCATGGACATCATGCATCAGCTTCAAAAGTGGCAAAGGTTTAGCACTGAATAAGGTGCCAACAAAGAAGAGAGACAAACTTGTCAGGCCTTTATCTTTATCATTTGTTCCAGCACAACACATCATCTGCATGCGATGCACATTGGACACTCAATGTTCTACAGCTAAAGTGTATCATTCGACCGGAAACCAAAGACAAATGTCTCGAGAGATTTTGGATGGAGAGGTTTACAAGTATTATGTTGATGGAGAATGGAAGAAATCTTCTTCCGGGAAAACTGTTTCCATCATCAACCCCACTACCAGAAAGACTCAATACAAAGTTCAAGCTTGTTCACAAGAGGAGGTTAATAAGGTCATTGACTTAGCAAAGTCTGCACAAAAATCATGGGCAAAGACCCCACTATGGAAGCGAGCTGAACTTCTTCATAAGGCAGCTGCTATCCTTAAAGAGCACAAAGCTCCAATTGCTGAGTGCCTGGTGAAAGAAATAGCAAAGCCAGCCAAAGATGCTGTCACAGAGGTTGTAAGATCTGGGGATCTGGTTTCTTACTGTGCTGAAGAAGGGGTAAGGATTTTGGGAGAGGGAAAGTTCTTGGTATCGGATAGCTTTCCCGGAAATGAAAGGACGAAATATTGCCTCACATCCAAGATTCCACTAGGAGTGATTTTAGCCATTCCACCTTTTAACTATCCTGTCAATCTTGCTGTCTCCAAAATTGCTCCTGCGCTGATTGCTGGAAACTCCATTGTGCTCAAGCCTCCAACTCAGGGAGCCGTTTCTGCTCTGCACATGGTTCACTGCTTTCACTTGGCTGGTTTTCCCAAAGGCCTAATCAACTGTGTCACTGGCAAAGGCTCAGAAATCGGTGACTTTCTTACAATGCATCCAGGAGTGAACTGTATAAGCTTCACTGGTGGAGATACTGGAATTTCAATTTCAAAGAAGGCAGGCATGATTCCATTGCAGATGGAGTTGGGAGGAAAAGATGCCTGCATTGTACTTGAGGATGCTGACCTGGATTTGGTTGCTGCAAACATTATAAAAGGAGGTTTTTCATACAGTGGTCAGCGGTGCACTGCTGTTAAGGTTGTCTTGGTAATGGAATCCGCTGCTGATGCCTTGGTTGAGAAAGTGAAGGCTAAGGTGGCAAAACTAAGTGTCGGGGCACCAGAGGATAACTGTGACATCACACCGGTTGTGTCAGAATCATCCGCCAATTTCATTGAAGGCCTTGTCCTGGATGCTAAGGAGAAAGGAGCTACATTCTGCCAGGAATACAGAAGAGAAGGCAATCTCATTTGGCCTTTGCTACTGGACAATGTTAGGCCAGACATGAGAATTGCATGGGAAGAGCCATTTGGACCAGTTTTGCCAGTAATTAGGATCAATTCAGTTGAAGAAGGAATCCATCATTGTAATGCAAGCAACTTTGGACTTCAGGGATGTGTCTTCACAAAAGATGTCAACAAAGCAATACTGGTCAGCGATGCAATGGAAACGGGAACAGTTCAGATAAATTCAGCCCCAGCTCGTGGGCCAGATCATTTTCCCTTTCAGGGTATAAAGGACAGTGGCATTGGATCTCAAGGGATTACCAACAGCATAAACATGATGACCAAGGTCAAAACTACTGTGATCAACTTACCCAGCCCTTCCTATACTATGGGCTAG 1683 0.4427 MMSSWTSCISFKSGKGLALNKVPTKKRDKLVRPLSLSFVPAQHIICMRCTLDTQCSTAKVYHSTGNQRQMSREILDGEVYKYYVDGEWKKSSSGKTVSIINPTTRKTQYKVQACSQEEVNKVIDLAKSAQKSWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLINCVTGKGSEIGDFLTMHPGVNCISFTGGDTGISISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESAADALVEKVKAKVAKLSVGAPEDNCDITPVVSESSANFIEGLVLDAKEKGATFCQEYRREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDVNKAILVSDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKVKTTVINLPSPSYTMG 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02280 560 CDD ALDH_F11_NP-GAPDH 79 551 - -
Cca11g02280 560 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 327 334 IPR029510 GO:0016491
Cca11g02280 560 SUPERFAMILY ALDH-like 77 551 IPR016161 GO:0016491
Cca11g02280 560 PANTHER NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 73 560 - -
Cca11g02280 560 PANTHER ALDEHYDE DEHYDROGENASE 73 560 - -
Cca11g02280 560 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 355 366 IPR016160 GO:0016491
Cca11g02280 560 Pfam Aldehyde dehydrogenase family 88 547 IPR015590 GO:0016491
Cca11g02280 560 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 331 521 IPR016163 GO:0016620
Cca11g02280 560 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 86 547 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02280 Cca-Chr11 49146868 49155434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02280 73 560 Aldehyde Dehydrogenase Gene Family AT2G24270 90.779 0.0 938
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02280 K00131 - gmx:100789100 939.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02280 11 49146868 49155434 Cca11g02280 11 49146868 49155434 ECH