Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02274 ATGTCGTCATCGAGAACGGTCCACGTCCTCTCCGTGCTTTTCCTCTGCGCTGTCACGTTCCAAGCCTCATCAGAAGCTGAATCATGGCTCAGAATCGGTTACTGGTACAGCGGAAGCGAGTTTCCCATATCCGAAATCAACTCGGCCCTCTACACTCACCTCATATGCGCCTTCGCCGACGTGAACGCTTCCTCCTTCGAAATAAGCCTCTCCTCCTCAAACCAGCAACGCTTCTCGACGTTCACGAACACCGTCAAACTCAAAAACCCTTCCATCACCACTCTTCTCTCCACCGGGGGAGACCAAAACAGCGCCACCATCCAATCCATGCTCACCAACGCTTCTTCAAGGAATCCCTTCATTCAATCCTCGATAGCAATGGCCAGGCTTTACGGATTCCACGGCCTCGACCTTTCCTGGTCCACCATTGAAACATCCTCCGACGCAGACAACCTAGGACAACTTTTCCACGAGTGGCGTCTTGCTGCCAAATCCGAAGCCAATAACTCTACGCTTCCGGAACTCTTCCTAACCGCTGCAGTTCAAGCTTCACCAGATTTGAACTACGGGTCCTACCCTGTAGACCGGATGAGAAGTAACTTGGATTGGGTACATGTTAACGCATACTCTTACCATACACCCTCGACGCAAAACTTCACTGCTGCACCTTCGGCTTTGTATGACCCTCATAATACTTATATCAACACGGACTATTACATCAAGGCGTGGATTGGGAAGGGGTTGGAGGCTAACAAGTTGGTTTTGGGTTTGCCTTTCTTTGGATTTGCGTGGAAACTCCAAAACCCCGATAACGACAAAATAGGTGCACTGGCAACGGGTCCAGCAGGTGGCGCGGACGATGGCTCTATAAGCTACAGGGACATAAAAAATAGTGTTCAGCAAAATGGGGCTCAAGTAGTGTATAATGGGACTTATGTTACCAATTATTGCTCCTTTGGATCAACATGGATTGGCTACGACGATGTTGAGGTTGTTCAAAACAAGGTGTCCTATGCAAGGGAAAAGGGGCTGCTTGGTTACTACGTTTGGCAAATTTCCCATGACGACCAAGATTGGACACTTGCTCGAGCAGCAGCTGAGCAGGTTGACAACGACAAAGATGAACGGTGGAAATTAATTGTCATCATTTTGAGTGTAATTGCTACCGGTGTCGTGTTAGGTGTGACAATCTACTTGCGAAGAAAGAGAATATTCAAATCAACTGGGAGGACACTGACTAAACCTTCGCAGTCTAAAGTGAATGATAAAGAAGCTGCAGGACCTTTTCATGGGGATGCTCCAGATTTACAAGTGTATAGATTTTCTGACATTGAAGCGGCTACAGATAAATTTTCATATGAAAATAAGCTGGGACAAGGTGGTTACGGTCCTGTTTACAAGGGCATCCTACCTGATGATCAGGAAATAGCCGTAAAGAAATTATCAAAAGCTTCTACACAAGGATTTGAGGAATTCAAAAATGAGGTAACACTAACAGCAAGGCTACAACATGTGAATCTTGTTCGGTTGTTGGGTTTCTGCATTGAACGAGGGGAGCAAATGCTGGTGTATGAGTACATGGCTAATAAGAGCCTCGACTTCTACCTTTTTGACCCTATTAGAAGATTTTTGTTAGATTGGAGTAAGCGCATTAACATCATTGAGGGGATTACACAAGGCCTTCTTTACCTTCAAGAATATTCTAGATTCACCATAATTCATAGAGACTTAAAAGCTAGTAATATTTTATTAGACCTGGAGATGAAGCCGAAGATTTCAGACTTTGGAATGGCTAGAATATTCACCAAAAATGAACTAGAGGCAAACACTAGCAAGATTGTGGGAACATAG 1851 0.4522 MSSSRTVHVLSVLFLCAVTFQASSEAESWLRIGYWYSGSEFPISEINSALYTHLICAFADVNASSFEISLSSSNQQRFSTFTNTVKLKNPSITTLLSTGGDQNSATIQSMLTNASSRNPFIQSSIAMARLYGFHGLDLSWSTIETSSDADNLGQLFHEWRLAAKSEANNSTLPELFLTAAVQASPDLNYGSYPVDRMRSNLDWVHVNAYSYHTPSTQNFTAAPSALYDPHNTYINTDYYIKAWIGKGLEANKLVLGLPFFGFAWKLQNPDNDKIGALATGPAGGADDGSISYRDIKNSVQQNGAQVVYNGTYVTNYCSFGSTWIGYDDVEVVQNKVSYAREKGLLGYYVWQISHDDQDWTLARAAAEQVDNDKDERWKLIVIILSVIATGVVLGVTIYLRRKRIFKSTGRTLTKPSQSKVNDKEAAGPFHGDAPDLQVYRFSDIEAATDKFSYENKLGQGGYGPVYKGILPDDQEIAVKKLSKASTQGFEEFKNEVTLTARLQHVNLVRLLGFCIERGEQMLVYEYMANKSLDFYLFDPIRRFLLDWSKRINIIEGITQGLLYLQEYSRFTIIHRDLKASNILLDLEMKPKISDFGMARIFTKNELEANTSKIVGT 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02274 616 Gene3D Glycosidases 44 356 - -
Cca11g02274 616 Gene3D Phosphorylase Kinase; domain 1 413 526 - -
Cca11g02274 616 SUPERFAMILY Chitinase insertion domain 260 326 IPR029070 -
Cca11g02274 616 SMART serkin_6 451 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02274 616 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 29 372 IPR001223 GO:0005975
Cca11g02274 616 Gene3D Transferase(Phosphotransferase) domain 1 527 616 - -
Cca11g02274 616 SUPERFAMILY Protein kinase-like (PK-like) 436 616 IPR011009 -
Cca11g02274 616 Pfam Glycosyl hydrolases family 18 32 355 IPR001223 GO:0005975
Cca11g02274 616 SMART 2g34 29 355 IPR011583 GO:0008061
Cca11g02274 616 SUPERFAMILY (Trans)glycosidases 30 370 IPR017853 -
Cca11g02274 616 Pfam Protein kinase domain 453 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02274 616 Gene3D - 259 326 IPR029070 -
Cca11g02274 616 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 19 592 - -
Cca11g02274 616 PANTHER CHITINASE 19 592 - -
Cca11g02274 616 ProSiteProfiles Protein kinase domain profile. 451 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02274 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 572 584 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02274 Cca-Chr11 49089893 49095414 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02274 1 370 Glycoside Hydrolase AT4G19810 43.817 2.45e-101 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca11g02274 Glyco_hydro_18 4.7e-66 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02274 - - vun:114175226 924.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02274 11 49089893 49095414 Cca11g02274 11 49089893 49095414 ECH