Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02270 ATGGCTTCAACTCTCATCGTTTTCTTCACTCTTGTTCTTACCTTCTTCCTCCTTCTCAAATCTCATTCTTCTGCTGAGACTCCTTTGTGGGTGAAAGCTGGTTACTACTATTCAGGCAGCGAAATTTCGGCTTCAGACATAAAAGCCACCCTTTTCACTCACCTCCTATGCGCTTTCGCCTTCATAAACTCCACCAGCTACAGCATCTTCATCAACTCTTCGGAGGTGCACAAGTTCTCCACCTTCACCACCACAGTGAGGCTCCAAAACCCTTCCGTTACAACTCTTCTGTCCATCAGGGGTGGCAGAGGGGACACTTCAGTCTTCTCCTCAATGCTGAACCAATCCTCTCACAGAAACTCTTTCATTGATTCTTCCATCACAACAGCCAGGCTATATGGCTTTCACGGCATAGACCTCTATGGGGCGGGACCAAGGCAACAAGGTTCAGACCTTGAAAATTTCAGAACCCTTTTGAAGGAGTGGCGTGCTGCTATAACTTCTGAGGCAAGAAACTCTAGCAAGAAAAAGTTGTTGTTGGTGATGTCAGGTTACTATCTTAAGGCTTCAGACTCCACGAGTTACCCCTTTGACTCAATGCAGGAGAATTTGGATTGGGTGCATTTTGTGGCTTATGATTACTATCTTCCTAGGAGGGACAATGTTACAGGTTTTCATGCAGCTTTGTATGGTTCATCAGGTTGGGACAACACTGATTCTGGCATCAAGGAGTGGAGGAGGAGGGGGTTTTCTTCTAAGAAGCTGTTAATAGGGTTGCCTTATCATGGATATCTGTGGAAAGTTGTGACACCTGGAGCAGAAACTGGTGTTGGAGCACCGGCATCAGGACCTGCCACTACAAAGGATGGTTCCATGGCTTATAAGTTGATAAAGAGTTACATGAAAAGCTTTGGGAATGGAGTTGTTTCGCATTACAATGCTAGTTTTGTGGTGAATCAGTTCACTGTTGCGCCTGTGACATGGGTTAATTTTGATGATGTGGAGGTAATCAAGGCCAAAGTTTCTTATGCAAAGGAAAATGGGCTACTTGGTTACAGCGTTTTCCAAGTAGGCAATGACGATAATTGGGAACTTTCAAGGGCAGCTCAAGAAGTTGACGAAGATCATCACAAGAGGAGATTGGTGATAATTGTTCTGCTTTCAACTCTGACTTTGGCGCTTCTATTGGGAATTGTACTTTGCTACTACCATCGAGGAACAGCAGCCACTACTGTCACAAAAATATTATATAAACTGAGATATTTATCAGCAACAGAAAAAGATATCGATGGAAACGCTTCTGATCTGATAGTATTTAGTTATCTCACTATTAAAGTGGCAACAAATAACTTTTCCAAAGATAATAGGCTCGGAGAGGGTGGATTTGGCACGGTTTACAAGGGCAAATTACGGAGGGGACAGGAAATAGCTGTAAAAAGACTCTCAGAAACTTCAAATCAAGGCCTTGAAGAGTTCAAGAATGAAATCACGCTTACAGCAAGACTACAACATGTGAATTTAGTTAGACTTCTGGGTTACTGCACAAAAAGGGAAGAGAAGATTCTGATCTATGAATACCTGCCAAACAAAAGCTTAGATCGTTTTCTCTTTGGTCTGTTGTTACATTACTTGTCCCCCATTAAGTTGATACATTTCTTCTAA 1662 0.4272 MASTLIVFFTLVLTFFLLLKSHSSAETPLWVKAGYYYSGSEISASDIKATLFTHLLCAFAFINSTSYSIFINSSEVHKFSTFTTTVRLQNPSVTTLLSIRGGRGDTSVFSSMLNQSSHRNSFIDSSITTARLYGFHGIDLYGAGPRQQGSDLENFRTLLKEWRAAITSEARNSSKKKLLLVMSGYYLKASDSTSYPFDSMQENLDWVHFVAYDYYLPRRDNVTGFHAALYGSSGWDNTDSGIKEWRRRGFSSKKLLIGLPYHGYLWKVVTPGAETGVGAPASGPATTKDGSMAYKLIKSYMKSFGNGVVSHYNASFVVNQFTVAPVTWVNFDDVEVIKAKVSYAKENGLLGYSVFQVGNDDNWELSRAAQEVDEDHHKRRLVIIVLLSTLTLALLLGIVLCYYHRGTAATTVTKILYKLRYLSATEKDIDGNASDLIVFSYLTIKVATNNFSKDNRLGEGGFGTVYKGKLRRGQEIAVKRLSETSNQGLEEFKNEITLTARLQHVNLVRLLGYCTKREEKILIYEYLPNKSLDRFLFGLLLHYLSPIKLIHFF 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02270 553 SUPERFAMILY Protein kinase-like (PK-like) 434 551 IPR011009 -
Cca11g02270 553 ProSiteProfiles Protein kinase domain profile. 451 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02270 553 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 17 538 - -
Cca11g02270 553 PANTHER CHITINASE 17 538 - -
Cca11g02270 553 Gene3D Glycosidases 45 362 - -
Cca11g02270 553 Gene3D Phosphorylase Kinase; domain 1 413 526 - -
Cca11g02270 553 Pfam Glycosyl hydrolases family 18 35 360 IPR001223 GO:0005975
Cca11g02270 553 Pfam Protein tyrosine and serine/threonine kinase 453 536 IPR001245 GO:0004672|GO:0006468
Cca11g02270 553 SUPERFAMILY (Trans)glycosidases 33 362 IPR017853 -
Cca11g02270 553 SMART tyrkin_6 451 553 IPR020635 GO:0004713|GO:0006468
Cca11g02270 553 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 30 376 IPR001223 GO:0005975
Cca11g02270 553 SMART 2g34 30 360 IPR011583 GO:0008061
Cca11g02270 553 ProSitePatterns Protein kinases ATP-binding region signature. 457 479 IPR017441 GO:0005524
Cca11g02270 553 Gene3D - 261 331 IPR029070 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02270 Cca-Chr11 49045351 49049529 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02270 1 372 Glycoside Hydrolase AT4G19810 42.706 3.14e-92 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca11g02270 Glyco_hydro_18 2.8e-56 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02270 - - aprc:113847882 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02270 11 49045351 49049529 Cca11g02270 11 49045351 49049529 ECH