Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02265 ATGGCGTCACAGAAACTCACCGAATACGAACGCAAACGTCTCGAGAACATTCGGCGCAACGATGAGATGATGGCCGCGCTCAAACTCCATTCCAAAGCCACTCAACTCTCCAATTTCAAGCGTCAAAGGGTTGGAACCAAATCCTACACTGTGAAGCCGGAAAAGAAACAGAAAACGGAAACCCCAATCGTCATAAGGCGCTCCCTGCGAACGAGGGGTATTCCACCGGATTCCAAGGGTCTCGATGGAGACACAGTGGGTTCCGCCGCTCCCGTTGAAACCCAACCTTCCGTTGAAAGTTCCGCTCCTATCTCCATGGCTGATGCTCGTGAAAGCGCTCACTCTGATACCGCCTTCGTTCAATCACTCTTGGGCTTGGCCCAAAAGGAGGCCCAAGAGCTAGGTGGTGCTAAAGGTGGCGGATTTTTAAACAATGCTCCCCTTGGGTTGGAATCTCTGTATTTGGATCCCGAGAACATTGCGCGGGTTGTTCCTGGAAGGATAACCAATGTGCGGGTTTTTCCTTCCACTAGTGTCAAAATGGTTGCGGCGGGTAACAAGTTTGGAAATGTTGGGTTCTGGAATGTGGGAGAAAGTGAGGTTCATTTATACCATCCCCATCGGGCTCCCATTTCTGGGATTTTGATTCAACCACATTGCTATTCCAAGATATACACTAGTTGTTATGATGGAATTCTTCGGCTAATGGATGTGGAGAAGGAGATCTTTGATCTGGTATTTGATAGTGATGAAAGTATATATATTCTCTCTCAACCACCAAATGAGGCAAACTGCCTGTATTTTGGTGAGGGTTCTGGGGGTTTAACTGTTTGGGATAACAGGATGGGAAAACGTTCGTCCCACTGGGTTTTGCACGAGAGTAGGATTAACACAATAGATTTCAAAAGTGAAAACCCTCATATGGTAGCTACTAGTTCCTCTGATGGAACTGCCTGCATCTGGGATTTGAGATATACTGACGCAGATAAACTCACAGCCTTGAGGACATTTACCCACAAAAGATCTGTGCAATCTGCGTACTTCTCTCCTTCTGGATGTAGCCTGGCAACTACAGGCCTGGACAACACAATTCGTATTTACAATGGAGTTAACTTGGAGGATGAAACTGTTATTCATCATAACAATCAAACTGGCAGATGGCTTTCTACTTTCAGAGCGAAATGGGGTTGGGATGACTCGTATCTCTTCGTTGGAAATATGAAAAGAGGAGTTGATGTGGTCTCAGCAGTTGAGAGGAAAATAGTTATGACTCTAGAGAGCCCACACATGTCTGCCATTCCGTGCAGATTTGATACACACTCTTACGAGGTTGGGATGCTAGTTGGAGCTACAAGTGGAGGCCAGGTTTATGTTTGGACGTCGCGCTAG 1389 0.4658 MASQKLTEYERKRLENIRRNDEMMAALKLHSKATQLSNFKRQRVGTKSYTVKPEKKQKTETPIVIRRSLRTRGIPPDSKGLDGDTVGSAAPVETQPSVESSAPISMADARESAHSDTAFVQSLLGLAQKEAQELGGAKGGGFLNNAPLGLESLYLDPENIARVVPGRITNVRVFPSTSVKMVAAGNKFGNVGFWNVGESEVHLYHPHRAPISGILIQPHCYSKIYTSCYDGILRLMDVEKEIFDLVFDSDESIYILSQPPNEANCLYFGEGSGGLTVWDNRMGKRSSHWVLHESRINTIDFKSENPHMVATSSSDGTACIWDLRYTDADKLTALRTFTHKRSVQSAYFSPSGCSLATTGLDNTIRIYNGVNLEDETVIHHNNQTGRWLSTFRAKWGWDDSYLFVGNMKRGVDVVSAVERKIVMTLESPHMSAIPCRFDTHSYEVGMLVGATSGGQVYVWTSR 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02265 462 MobiDBLite consensus disorder prediction 72 110 - -
Cca11g02265 462 PANTHER UNCHARACTERIZED 1 461 - -
Cca11g02265 462 SUPERFAMILY WD40 repeat-like 166 460 IPR036322 GO:0005515
Cca11g02265 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 289 324 IPR001680 GO:0005515
Cca11g02265 462 Pfam WD domain, G-beta repeat 334 368 IPR001680 GO:0005515
Cca11g02265 462 Pfam WD domain, G-beta repeat 292 322 IPR001680 GO:0005515
Cca11g02265 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 336 368 IPR001680 GO:0005515
Cca11g02265 462 SMART WD40_4 282 322 IPR001680 GO:0005515
Cca11g02265 462 SMART WD40_4 330 368 IPR001680 GO:0005515
Cca11g02265 462 SMART WD40_4 197 237 IPR001680 GO:0005515
Cca11g02265 462 Gene3D - 159 462 IPR015943 GO:0005515
Cca11g02265 462 PANTHER WD REPEAT-CONTAINING PROTEIN 76 1 461 IPR033052 GO:0006974
Cca11g02265 462 ProSitePatterns Trp-Asp (WD) repeats signature. 309 323 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02265 Cca-Chr11 48990488 48993597 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02265 167 413 U-box Gene Family AT1G04510 24.324 1.36e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02265 K24755 - gmx:100800122 781.171