Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02264 ATGTCAGGCTGGGATGAAGGAGCCGTCTACTACAGCGACCAAGCGCTCGCCGGTGACGACGGCGCCGGCCTCCGCGGCGATGGCGGCACCGATTCGAACCACTCCCTCCTCCAGAAATTCAAGGAGTTCATCCGAAACTTCGAGACCGCCAACAACTTCGAAACCGCGGCGGCGCAGGTTCTCGTGAGTTTGAAGACGAAGGTGGCTGGGGACGCTGGAGATATGGAGGATCCATTGCCTGGTGATGTTCAGATTTTGCTCACTTCCAAGGAGGATTCGGTGTCGATGAGATCGCTCGGGGCTCAATATATATCGAAGCTTGTTAAAATTTCTGGGATTACTATTGCTGCATCCAGGACTAAGGCAAAGGCTACTTATGTTACTCTGGTGTGTAAGAATTGTAAGAAGGGGAAGCAGGTTCCGTGCCGGCCGGGACTTGGGGGAGCAATTGTTCCTCGGTCTTGCGATCATGTTCCTCAGCCTGGGGAAGAACCTTGCCCACTTGATCCTTGGCTTGTGGTTCCAGACAAGAGTAAATATGTGGATCAACAAACCTTGAAGCTGCAAGAAAATCCAGAGGATGTTCCAACTGGAGAGCTTCCTAGAAACCTGCTTCTCTCTGTGGATCGTCAACTGGTTCAGACAGTAGTGCCTGGCTCAAGACTGACAATAATGGGAATTTATAGTGTCTACCAGGCTTCTAACTCTTCTGCATCCCACAAAGGAGCTGTTGCAGTTAGACAGCCTTATATTAGGGTTGTAGGAATAGAAGAAACAAATGAGACCAAGTCTCGTGGTCTGGCTGCATATACTCAAGATGAGATAGAAGAATTCAAAAAATTTGCTGCTGAGCCTGATGCATATAAAAATATCTGCTCCAAGATTGCTCCATCTATATTTGGGCATGATGATGTCAAAAAGGCTGTGGCCTGTCTTCTGTTTGGGGGGTCAAGAAAGAATTTGCCTGATGGAGTCAGGTTAAGAGGTGATATCAATGTATTGCTTCTGGGGGATCCATCTACAGCAAAGTCTCAGTTTTTGAAGTTTGTTGAAAAGACAGCTCCTGTAGCTGTTTATACTTCTGGAAAAGGCTCATCAGCTGCTGGTCTCACAGCTTCTGTAATCCGAGATAGCAGCACGCGTGAGTTTTATCTTGAAGGAGGAGCTATGGTCTTGGCTGATGGAGGTGTTGTCTGCATTGATGAGTTTGATAAGATGAGGCCAGAAGATAGGGTTGCCATTCATGAGGCAATGGAACAACAAACTATATCCATAGCCAAAGCTGGAATAACAACTGTTCTTAATTCAAGAACTTCAGTTCTTGCTGCTGCCAACCCTCCATCAGGACGTTATGATGATCTTAAGACTGCACAGGATAACATTGATTTGCAGACAACTATTCTTTCTAGGTTTGATTTAATTTTCATTGTGAAGGACATAAGAATGTACAGCCAAGACAAGATAATAGCTAATCATATCATAAAAGTCCATGCATCAGCTGGTGCAACAATGGGTGAGAGCAGAACTTCTTCTAAAGAAGATAATTGGCTGAAGAGGTATTTACAATATTGCCGAAATGAATGCCACCCTCGTCTATCGGAATCTGCAGCAACATTATTGCAGAATCATTATGTGAAAATCAGACAGGATATGAGGCAACAAGCCAATGAATCTGGAGAAGCTGCAGCAATACCAATTACTGTGAGGCAGCTGGAAGCTATTGTTAGGTTGAGTGAGTCACTTGCAAAGATGAAACTATCTCATATTGCTACTGAGGAGAATGTGCAAGAAGCAGTAAGGCTTTTCACGGTGTCTACAATGGATGCAGCGAAGTCGGGAATAAACCAACAAATAAATCTTACACCTGAAATGGCAAATGAGATAAAGCAAGCTGAAACTCAGATAAAGAGAAGAATTGGGATTGGAAACCACATATCAGAAAGAAGGCTGATTGATGACCTCAGCAGAATGGGAATGAATGAATCTATTGTGAGAAGAGCTCTTATTATAATGCACCAGAGAGATGAAATAGAGTACAAGAGAGAAAGGCGTGTTGTATTTAGGAAAGCATGA 2073 0.4438 MSGWDEGAVYYSDQALAGDDGAGLRGDGGTDSNHSLLQKFKEFIRNFETANNFETAAAQVLVSLKTKVAGDAGDMEDPLPGDVQILLTSKEDSVSMRSLGAQYISKLVKISGITIAASRTKAKATYVTLVCKNCKKGKQVPCRPGLGGAIVPRSCDHVPQPGEEPCPLDPWLVVPDKSKYVDQQTLKLQENPEDVPTGELPRNLLLSVDRQLVQTVVPGSRLTIMGIYSVYQASNSSASHKGAVAVRQPYIRVVGIEETNETKSRGLAAYTQDEIEEFKKFAAEPDAYKNICSKIAPSIFGHDDVKKAVACLLFGGSRKNLPDGVRLRGDINVLLLGDPSTAKSQFLKFVEKTAPVAVYTSGKGSSAAGLTASVIRDSSTREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIANHIIKVHASAGATMGESRTSSKEDNWLKRYLQYCRNECHPRLSESAATLLQNHYVKIRQDMRQQANESGEAAAIPITVRQLEAIVRLSESLAKMKLSHIATEENVQEAVRLFTVSTMDAAKSGINQQINLTPEMANEIKQAETQIKRRIGIGNHISERRLIDDLSRMGMNESIVRRALIIMHQRDEIEYKRERRVVFRKA 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02264 690 SUPERFAMILY Nucleic acid-binding proteins 49 253 IPR012340 -
Cca11g02264 690 SMART mcm 92 607 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cca11g02264 690 Pfam MCM P-loop domain 275 497 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca11g02264 690 Pfam MCM AAA-lid domain 516 605 IPR041562 -
Cca11g02264 690 ProSitePatterns MCM family signature. 396 404 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cca11g02264 690 Gene3D - 268 625 IPR027417 -
Cca11g02264 690 ProSiteProfiles MCM family domain profile. 287 493 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca11g02264 690 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 600 617 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cca11g02264 690 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 524 539 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cca11g02264 690 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 97 112 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cca11g02264 690 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 123 135 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cca11g02264 690 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 247 259 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cca11g02264 690 CDD MCM5 290 605 - -
Cca11g02264 690 Gene3D - 96 231 IPR012340 -
Cca11g02264 690 PRINTS Mini-chromosome maintenance (MCM) protein family signature 388 402 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca11g02264 690 PRINTS Mini-chromosome maintenance (MCM) protein family signature 440 452 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca11g02264 690 PRINTS Mini-chromosome maintenance (MCM) protein family signature 467 475 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca11g02264 690 PRINTS Mini-chromosome maintenance (MCM) protein family signature 328 343 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca11g02264 690 PRINTS Mini-chromosome maintenance (MCM) protein family signature 416 429 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca11g02264 690 Pfam MCM OB domain 96 231 IPR033762 -
Cca11g02264 690 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 48 636 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cca11g02264 690 Gene3D - 123 181 - -
Cca11g02264 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 606 IPR027417 -
Cca11g02264 690 PANTHER DNA REPLICATION LICENSING FACTOR MCM5 48 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02264 Cca-Chr11 48983422 48988734 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02264 1 690 Core DNA Replication Machinery Family AT2G07690 75.034 0.0 1113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02264 K02209 - gmx:100779483 1247.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02264 11 48983422 48988734 Cca11g02264 11 48983422 48988734 ECH