Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02263 ATGCCGGACGGAGAATCCTCTAGCGTCGCCGGCGGTCAACCGTCCGTCGATCCCTCTTCCAGTCTTTCTCAAGTCAAGAAAGATCCCAGGAAAATTGCAAGAAAGTATCAGTTGGAGTTGTGCAAAAAGGCTATGGAAGAAAACATAATTGTGTATTTGGGGACAGGGTGTGGGAAGACTCACATTGCCGTGCTTCTTATGCATGAGATGGGTCATTTGATACGGAAACCGCAGAAGAACATATGTGTCTTTCTTGCTCCCACTGTGGCTTTAGTTCATCAGCAAGCAAAGGTTATAGAAGACTCTACTGATTTTAAGGTTGGGACTTACTGTGGGAGTTCAAAGCGCTTGAAACGTCATCAAGACTGGGAGCAGGAGATTGAACAATATGAGGTTCTTGTTATGACCCCACAAATATTACTTCACAACTTATCTCATTGTTTCATCAAAATGGAGATGATTGCACTTTTGATATTTGATGAATGTCATCATGCTCAAGTCAAAAGCAACCATGCTTATGCAGTAATCATGAAAGTCTTCTACAAAAGTAATTCCACAAAGGTTCCCCGTATATTTGGCATGACTGCTTCCCCTGTTGTAGGAAAAGGTGCTTCTAGTGAAGCAAATCTGGCAAAAAGCATCAATAGTCTTGAACAAATGCTTGATGCTAAGGTATACTCTGTTGAAGACAAGGAATTGCAATCTTTTGTGACCACTCCTGTGATTAATATATATCGTTATGGTTCAACTGCAAGTGGGGAAACTAACTTGTACTTGAAAATTGAGGAGATTAAACGCCAGTGCATAGCAACCCTTGGTAGGAGTATAGAAGATCACCAGAAACGGATGAACACAAAGAAACTTCTGAACCGGATGCATGATAATGTGGTTTTCTGTATTCAGAATCTTGGCATTTGGGGAGCATTGCAAGCTAGTCGTATTCTTTTGAGTGGTGATCGTTCCGAGAGGCATGAACTAGTGGAGGCAGAAGGAAATTCAAGTGATGACTCTGTGTGTGATAAATATCTTGCTCAGGCTGCTGAACTTTGTACTTCACAATGCATGATAGGTGACAGTGCATCTGATTTATCTTCTGTGGAAATATTAAAAGAGCCATTTTTCTCAGCAAAGATTTTACGCCTCATTGGGATACTGTCCAACTTTAGGTTGCAAAAGAACATGAAGTGTATAATTTTTGTGAATAGAATTGTGACTGCAAGATCCCTGTCATGCATACTACAGAAGCTCAAGCTTCTAAGACAATGGAGGAGTGATTTTTTGGTAGGAGTCCATGCTGGACTGAAGAGTATGTCGCGAAAGACCATGAACACCATTGTTGATAAGTTTCGCTCAGGAGAGTTGAATCTATTGGTTGCAACCAAAGTGGGTGAAGAAGGACTTGACATTCAGACATGTTGCCTTGTTGTACGATTTGATCTTCCAGAAACTGTTTCCAGCTTTATACAGTCAAGAGGTCGTGCACGTATGCCTCAGTCAGAATATGCCTTTTTGGTGGACAGTGGCAATAAGAAGGAACTAGACATAATTGATGGTTTTGAAAAAGATGAGTACCGAATGAATATGGAAATCACTATTCGAACATCCAATGAGACATACATCATTCCTGAGGAAAGAATATTTAGAGTTGATTCGTCTGGTGCTTCTGTTAGTTCTGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTACTTTGACCCCAAGCCAAATTTTTATTACTTAGATGATTCGGGGGGAGTTGTCTGCCACATAACATTTCCTTCGAATGCACCAATACACCAAATTTTGGGTACACCGCAGTTGTCTATGGAGGCTTCCAAAAGAGATGCTTGCCTGAAAGCAATAGAAGAACTTCATAAATTCGGTGCTTTAAGTGATTGTCTCTTGCCGAAGCAGGATGATGTAGAGCCAGAGGAGCGGGTTTCAGGCTCTTCTGATGAAGATGAATGTGAAGATGGCATGTCAAGAGGAGAATTACATGAGATGCTAATTCCTTCTGCCTTGGGACAATCATGGATAAATGAGGATAAAGTTGTCTGTCTTTACTCTTACTACATAAAATTTTGTCCCTCTCCAGCAGATAGGGTCTACAAAGCATTTGGTCTATTTATCATGGCTAGTCTTCCAATGGAGGCCGAGAAATTGGAACTTGATCTCCATCTTGCTCATGGTCGATCTGTGATGACACAATTTGTCCCATTTGGAGTTGTAGAATTTGACAAAGATGAGATTAAGATGGCAGAAAATTTTCAAGAAATGTTCCTCAAAATTATACTTGATAGATCAGAATTTGTTTCCGAGTTTGTAGACTTGGGTAAGGGTGGTGAATCTCTCACAAGCACATCAACCTTCTACCTTTTGCTTCCAGTTGTATTACAATATGAAAATGCCATGAAAGTAGACTGGAAGACAGTGAAGAGATGCCTTTGTTCACCAATTTTCAGGCACCCAGCAGATACTATGGATAAAAAAGTTTTCCCTTTAGATATTCACCTGCAACTTGCCAATGGTTACAGAAGTGTACGAGATGTTGAGAATAGTTTAGTGTATGCCCCACATAAGAAGAACTTCTATTTTGTCACAAGTATTAACTATGAAAAGAATGGATTTAGTCCTCATAAAGATTCAGGCACTTCAAGCTATGTGGATTACTACATTGAAAAGTTTTCCATTCACCTCAAATGCCCTGAACAACCACTTCTGCATGTAAAACCACTCTTCAATTTGCACAACCTGCTACACAACCGAAAGCCTGGGGATGCAGAACCACATGAGCTGGAGGAAGAACCACATAAGCTGGAGGAATACTTAATTTATTTGCCTCCTGAGCTATGTGAACTGAAAATAATAGGCTTTTCAAAGGATATTGGCAGTTCCATATCTTTGTTGCCTTCAATTATGCATCGTCTTGGAAACTTGATGGTGGCTATTGAACTCAAGCACATGCTATCTTCTTCCTTTCCGGAGGCTGCTGAAATTAGTGCTCTTAGAGTTCTAGAGGCCCTCACCACTGAGAAGTGTCAGGAGTGCTTTTCCCTTGAAAGACTTGAAGTGCTTGGCGATGCTTTCCTTAAATTTGCTGTTGCACGTCATTTTTTTCTCATGTACGACAGCCTTCATGAAGGAGACCTCACAAAAAGGCGTTCTAATGCTGTAAATAATTCCAATTTGTTTAAGTTGGCTATTAGGCGCAATTTGCAGGTCTATATATGCGACCAAAAATTTGATCCCTTGCAGTTTTATGCATTAGGTCGTCCTTGCCCAAGAGTTTGTAGCAAGGAAACCGAAGAAAGCATACACTTGTGTTTAAATTCCGTTAAGGAGCAAGGAGGAGCAACTGAAACCCGATGTAACAAAAATCATCATTGGTTACATAGGAAAACAATTGCTGATGTGGTTGAAGCTCTGGTTGGAGCTTTCCTGGTTGACAGTGGCTTTAAAGCTGCAATTGCCTTTCTTACATGGATTGGCATACGAGTTGATTTTGAAGCTTCACAAGTAGTTAATATTTGCTTAGCAAGTGTTGGCTATTTCCCTCTTTCATCTGATGTAGACATTCCATCTCTTGAAAGTAAGCTAGGACATAACTTTGTTCATAAGGGTCTGCTTCTCCAGGCATTTGTACATCCTTCATACAATAAGCATGGAGGAGGCTGTTATCAGCGATTGGAGTTTCTTGGAGATGCTGTCCTTGATTATTTGATTACTTCATATCTATTCTCAGCTTATCCAAAACTAAAGCCTGGTCAATTGACAGATTTGAGATCATTGTCTGTTAACAATAAGGCATTTGCCTGTGTAGCAGTAGATCGCAGTTTTGATAAATTTCTCTTGTGTGATTCAAATTGCTTGTCTGAGGCAATAAAAAAGTACGTGGACTACGTTAGAAGACCTGTATCAGTTTGTGGCATTAAAGAAGGGCCAAAATGTCCCAAGGCACTAGGTGACTTGGTGGAATCTTGTGTTGGTGCCATCCTTCTTGATTCAGGGTTCAATTTGGACAAAGTTTGGAAGATTATGACTTCATTCTTGGACCCAATCATGAAATTCTCATCAAGCTTGCAGCTCAGTCCTGTTAGGGATCTGCGAGAACTTTGCCAATCTCATAATTTGGAGTTGGAATTTCTGCCAGTGGCCTCAAAACTGACTAAAACGTTTTCAGTTGAAGCCAAAGTGACCGGGAATGGTGTATGTGAAACAGCTTCAGCAATTGGCCAAAATAAAAAGGAGGCTTCTAGAATTGCTTCACAACTACTTTTTTCAAAGTTCAAGACTCAAGGCTGGAAAGCAAAGTCAAAGACTTTGGAAGAAGTTCTCGAATCAACTTCTAAGATGACACCAAAACTTATTGGCTATGATGAAACTCCTATTGATGTAACAGATACCAATACCGCAGGGCACATAATGGTTAATTCAGACAAGTCTTCATATGTAAAATACAACCAAGAGACAGTTGAAATATGCTCTCCATGTGTGAAACCTTTTGGCCAAAGGCTTCAATCTTCTGCAAAGGGAAAGCTTAGTCAAATATTTGAAAATAGTAATAGTGGCAGTGACTCGTCAGGGACAGGTAGTATAACGTCATAG 4626 0.4025 MPDGESSSVAGGQPSVDPSSSLSQVKKDPRKIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMHEMGHLIRKPQKNICVFLAPTVALVHQQAKVIEDSTDFKVGTYCGSSKRLKRHQDWEQEIEQYEVLVMTPQILLHNLSHCFIKMEMIALLIFDECHHAQVKSNHAYAVIMKVFYKSNSTKVPRIFGMTASPVVGKGASSEANLAKSINSLEQMLDAKVYSVEDKELQSFVTTPVINIYRYGSTASGETNLYLKIEEIKRQCIATLGRSIEDHQKRMNTKKLLNRMHDNVVFCIQNLGIWGALQASRILLSGDRSERHELVEAEGNSSDDSVCDKYLAQAAELCTSQCMIGDSASDLSSVEILKEPFFSAKILRLIGILSNFRLQKNMKCIIFVNRIVTARSLSCILQKLKLLRQWRSDFLVGVHAGLKSMSRKTMNTIVDKFRSGELNLLVATKVGEEGLDIQTCCLVVRFDLPETVSSFIQSRGRARMPQSEYAFLVDSGNKKELDIIDGFEKDEYRMNMEITIRTSNETYIIPEERIFRVDSSGASVSSGYSISLLHQYCSKLPHDEYFDPKPNFYYLDDSGGVVCHITFPSNAPIHQILGTPQLSMEASKRDACLKAIEELHKFGALSDCLLPKQDDVEPEERVSGSSDEDECEDGMSRGELHEMLIPSALGQSWINEDKVVCLYSYYIKFCPSPADRVYKAFGLFIMASLPMEAEKLELDLHLAHGRSVMTQFVPFGVVEFDKDEIKMAENFQEMFLKIILDRSEFVSEFVDLGKGGESLTSTSTFYLLLPVVLQYENAMKVDWKTVKRCLCSPIFRHPADTMDKKVFPLDIHLQLANGYRSVRDVENSLVYAPHKKNFYFVTSINYEKNGFSPHKDSGTSSYVDYYIEKFSIHLKCPEQPLLHVKPLFNLHNLLHNRKPGDAEPHELEEEPHKLEEYLIYLPPELCELKIIGFSKDIGSSISLLPSIMHRLGNLMVAIELKHMLSSSFPEAAEISALRVLEALTTEKCQECFSLERLEVLGDAFLKFAVARHFFLMYDSLHEGDLTKRRSNAVNNSNLFKLAIRRNLQVYICDQKFDPLQFYALGRPCPRVCSKETEESIHLCLNSVKEQGGATETRCNKNHHWLHRKTIADVVEALVGAFLVDSGFKAAIAFLTWIGIRVDFEASQVVNICLASVGYFPLSSDVDIPSLESKLGHNFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLFSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRSFDKFLLCDSNCLSEAIKKYVDYVRRPVSVCGIKEGPKCPKALGDLVESCVGAILLDSGFNLDKVWKIMTSFLDPIMKFSSSLQLSPVRDLRELCQSHNLELEFLPVASKLTKTFSVEAKVTGNGVCETASAIGQNKKEASRIASQLLFSKFKTQGWKAKSKTLEEVLESTSKMTPKLIGYDETPIDVTDTNTAGHIMVNSDKSSYVKYNQETVEICSPCVKPFGQRLQSSAKGKLSQIFENSNSGSDSSGTGSITS 1541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02263 1541 Pfam Helicase conserved C-terminal domain 382 495 IPR001650 -
Cca11g02263 1541 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 377 532 IPR001650 -
Cca11g02263 1541 Gene3D - 1368 1447 - -
Cca11g02263 1541 Gene3D Ribonuclease III domain 1006 1169 IPR036389 GO:0004525|GO:0006396
Cca11g02263 1541 SUPERFAMILY RNase III domain-like 1198 1362 IPR036389 GO:0004525|GO:0006396
Cca11g02263 1541 SMART DRBM_3 1371 1437 IPR014720 -
Cca11g02263 1541 MobiDBLite consensus disorder prediction 1 28 - -
Cca11g02263 1541 CDD RIBOc 1012 1176 IPR000999 GO:0004525|GO:0006396
Cca11g02263 1541 SMART PAZ_2_a_3 833 988 IPR003100 GO:0005515
Cca11g02263 1541 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 216 IPR014001 -
Cca11g02263 1541 Gene3D Ribonuclease III domain 1197 1367 IPR036389 GO:0004525|GO:0006396
Cca11g02263 1541 MobiDBLite consensus disorder prediction 1 26 - -
Cca11g02263 1541 CDD DEXHc_dicer 31 230 - -
Cca11g02263 1541 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1370 1438 IPR014720 -
Cca11g02263 1541 Gene3D - 31 268 IPR027417 -
Cca11g02263 1541 PANTHER DICER-LIKE PROTEIN 4 29 1474 - -
Cca11g02263 1541 SMART riboneu5 1214 1366 IPR000999 GO:0004525|GO:0006396
Cca11g02263 1541 SMART riboneu5 1011 1178 IPR000999 GO:0004525|GO:0006396
Cca11g02263 1541 Gene3D paz domain 850 960 - -
Cca11g02263 1541 CDD DSRM_EIF2AK2-like 1369 1436 - -
Cca11g02263 1541 Gene3D - 370 532 IPR027417 -
Cca11g02263 1541 SUPERFAMILY RNase III domain-like 1011 1171 IPR036389 GO:0004525|GO:0006396
Cca11g02263 1541 ProSiteProfiles Ribonuclease III family domain profile. 1199 1343 IPR000999 GO:0004525|GO:0006396
Cca11g02263 1541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 511 IPR027417 -
Cca11g02263 1541 SUPERFAMILY dsRNA-binding domain-like 1325 1436 - -
Cca11g02263 1541 Pfam Dicer dimerisation domain 561 646 - -
Cca11g02263 1541 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 561 651 IPR005034 GO:0016891
Cca11g02263 1541 ProSiteProfiles PAZ domain profile. 855 962 IPR003100 GO:0005515
Cca11g02263 1541 Pfam PAZ domain 855 983 IPR003100 GO:0005515
Cca11g02263 1541 SUPERFAMILY PAZ domain 852 960 IPR036085 GO:0005515
Cca11g02263 1541 CDD RIBOc 1215 1365 IPR000999 GO:0004525|GO:0006396
Cca11g02263 1541 Gene3D Dicer dimerisation domain 557 652 IPR038248 -
Cca11g02263 1541 Pfam Ribonuclease III domain 1234 1343 IPR000999 GO:0004525|GO:0006396
Cca11g02263 1541 Pfam Ribonuclease III domain 1027 1158 IPR000999 GO:0004525|GO:0006396
Cca11g02263 1541 PANTHER DICER-RELATED 29 1474 - -
Cca11g02263 1541 Pfam Type III restriction enzyme, res subunit 41 198 IPR006935 GO:0003677|GO:0005524|GO:0016787
Cca11g02263 1541 SMART helicmild6 407 497 IPR001650 -
Cca11g02263 1541 SMART ultradead3 29 234 IPR014001 -
Cca11g02263 1541 ProSiteProfiles Ribonuclease III family domain profile. 976 1158 IPR000999 GO:0004525|GO:0006396
Cca11g02263 1541 ProSitePatterns Ribonuclease III family signature. 1234 1242 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02263 Cca-Chr11 48962273 48979243 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02263 395 494 Eukaryotic Initiation Factors Gene Family AT3G19760 30.000 2.63e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02263 K11592 - gmx:100818702 2699.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02263 11 48962273 48979243 Cca11g02263 11 48962273 48979243 ECH