Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02258 ATGGCTTTCCACGACCACCAAATACCGTTCCACCGCTTCGCCGACGACCAGGAGCTCAGCCAGAATAGAGACAGCCTCCCACCGACATGGCGCCAACAGAATTTCCTCGATCAGGATTTGAGGGACTACAAAGCCGACATTCTAGGACACCCTCTCTACGACCAACTCTTGTCGGCGCATGTCTCCTGTCTCAGGATTGCCACTCCCGTCGACCAGCTTCCCAGGATCGACGCCCAGCTTCAGCAGTCGCACCGCGTGCTTCACAAATACTCTGCTCTCCCCCACAACGCCGTCGTCGATGACAAGGACCTTGATCACTTCATGACCCATTATGTTCTGTTGCTATGTGCCTTTAAAGAAAAATTGCAGCAGCATGTCCGTGTTCATGCAATGGAGGCAGTGATGGCTTGTTGGGATCTGGAGCAGTCTCTGCAAAGCTTGACAGGTGTATCTCCTGGTGAAGGAACGGGTGCAACAATGTCAGATGATGAAGATGAGCAGGCAGAGAGCAATGGGAACTTATATGAAGGTAGCCTCGATGGCGCTGATTCTCTTGGCTTTGGTCCTCTTGTCCCCACTGAGACTGAAAGATCTTTGATGGAGAGAGTCAGACATGAATTGAAGCATGAACTCAAACAGGGTTATAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGACGAGCAGGGAAGCTCCCAGGTGACACCACATCCCTTTTGAAAGCTTGGTGGCAAGCACATTCTAAATGGCCCTACCCCACTGAGGAAGACAAGGCTAGATTGGTGCAGGAAACAGGGTTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACAAATAACCCCTCATCCTCAAGTAATTCCAAAAGCAAGCGCAAGAGTGCAGGAGAAAGCAGCAAGCAGAGCTTCATGTGA 945 0.4921 MAFHDHQIPFHRFADDQELSQNRDSLPPTWRQQNFLDQDLRDYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSHRVLHKYSALPHNAVVDDKDLDHFMTHYVLLLCAFKEKLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDEQAESNGNLYEGSLDGADSLGFGPLVPTETERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNNPSSSSNSKSKRKSAGESSKQSFM 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02258 314 Pfam KNOX1 domain 43 84 IPR005540 GO:0003677|GO:0005634
Cca11g02258 314 Pfam Homeobox KN domain 246 285 IPR008422 GO:0003677|GO:0006355
Cca11g02258 314 Gene3D - 227 288 - -
Cca11g02258 314 ProSiteProfiles ELK domain profile. 206 226 IPR005539 GO:0003677
Cca11g02258 314 SMART HOX_1 228 293 IPR001356 GO:0003677
Cca11g02258 314 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 21 308 - -
Cca11g02258 314 CDD homeodomain 229 289 IPR001356 GO:0003677
Cca11g02258 314 Pfam KNOX2 domain 98 148 IPR005541 GO:0003677|GO:0005634
Cca11g02258 314 MobiDBLite consensus disorder prediction 283 314 - -
Cca11g02258 314 SMART KNOX1_2 41 85 IPR005540 GO:0003677|GO:0005634
Cca11g02258 314 ProSiteProfiles 'Homeobox' domain profile. 226 289 IPR001356 GO:0003677
Cca11g02258 314 SUPERFAMILY Homeodomain-like 228 293 IPR009057 -
Cca11g02258 314 MobiDBLite consensus disorder prediction 149 172 - -
Cca11g02258 314 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 21 308 - -
Cca11g02258 314 Pfam ELK domain 206 227 IPR005539 GO:0003677
Cca11g02258 314 SMART ELK_2 206 227 IPR005539 GO:0003677
Cca11g02258 314 SMART KNOX2_2 94 149 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02258 Cca-Chr11 48854964 48863323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02258 43 309 Homeobox Transcription Factor Family AT5G11060 81.919 4.20e-161 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Cca11g02258 KNOX2 4.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02258 - - ccaj:109791011 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02258 11 48854964 48863323 Cca11g02258 11 48854964 48863323 ECH