Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02252 ATGGGTTCTGCCTCTAGTAGACTTGGTCCTCGCCCTTCTAATTCTAGTCCCAGGGTCAACCGCTTCAGACTTTCGTCTCTTCTATGTGGCTCCTCCACCTCTCGCTCCATTTATCAGATGGAAGAACATTCATCTGAACTCCAGGTTGATTCAGCGAGAGATATTAATGGTGTAATTCAGAAAGTCACTGAGGAATCATCTCTATCATATACAGAAGGTAGAATTAGCTGCAGTCCCCGTGCTGAAACTGCAACACCATCTGATACGAGAGCTGAGTTCTCTGGGAATACTAGTGTTGAAGGTTCTTCTAGAAACATAACAAATAGTCAGAGGAACTGCTTGTCTGAACATGAGGAGCTAGTTCCTCCTTATCAGGTAAGTGCTGGTCATAGTGGTCATGAATCACGTAGTGATAGTAGCAACACAGCTAGTACTTCATTTGTAGAACAGCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATGTAGTCAATGATGTTAATGATCCAGTGGTTAGTGGTGTCTCTCAAGTCTCCCATGAGACAATGCATCCAAGAAGTTCAACTCCTCAAGAGCATGGGAATTTTGGTTCTGGTGAAATTTCTGTTGAGAATCACACTAGTGCATTCATATCTATCCAAAATTCTTCCAACCCTGTTACTCAAGTGCCAGAAGATGAGCCTCGTCGCGAAACAATACCTTCAGGTTTAGGTATTCTTGTGTCCAATCGGGAAAGAGGGCCTGGAAATGATAGTGTGCTTCAAGTTGACGTGGTCACAATATCTTCTAACATTTTGTCTGGAAGCAGTGCTGATGCCATTGATCATGATGCCAGAAGAAATGGTAGAAGATTATTTTGGGATGCTTTTTCACGACGTAGTTCCAGAAGGCTTGGTGATTCTCCAACCATTGTCTTCTCTACTGGAGGTGCTGATGATCCCGGATCTCAGGATCGATGGCTAGTTGATTTTGGTAGTGATTTGTCAAATGACGGGGTTGGAGGTGCTTCTGGATATATGGGCAGTAGAATTCACAGGTTTAATGAACGAATGCGGCACTCAAGATCTGAGATCTGGGAAAGGCTTCGTGGTGGCTTTGATGAGATTGGTCGGTGGAATTCATGTCCTTTAGGACTCCATGCAGATGGCATGTGCTCATGCGAGTCTTCCCCAATGGCTGAAGAATCTAGCACTCGAGCAAGTATTTCAAGAATAGTAATGCTGGCTGAGGCTTTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCAGGATCGCTGTCTCTGTCGATGGTCTCACTCCCTGCACCTGAATCAATTGTTGATTCCTTCCCTCTGAGATCTCACAAAAAGGTTGATGTAGTTGATGGAGGCAATGATGTTGAACAATGTTATATATGTCTGGCGGAGTATGAAGAAGGTGACCAAATACGAGTTCTTCCTTGCTTCCACGAGTATCACAAGTCATGTGTTGATAAGTGGCTTAAAGAAATACATGGTGTATGTCCTCTGTGTCGTGGCAATGTCTGTGGAGGATTCACAGAGTCTTCTGCCCACTCAGAGGTGCAGTCTCATTGA 1584 0.4413 MGSASSRLGPRPSNSSPRVNRFRLSSLLCGSSTSRSIYQMEEHSSELQVDSARDINGVIQKVTEESSLSYTEGRISCSPRAETATPSDTRAEFSGNTSVEGSSRNITNSQRNCLSEHEELVPPYQVSAGHSGHESRSDSSNTASTSFVEQQSSDPVSVNVSANKDVVNDVNDPVVSGVSQVSHETMHPRSSTPQEHGNFGSGEISVENHTSAFISIQNSSNPVTQVPEDEPRRETIPSGLGILVSNRERGPGNDSVLQVDVVTISSNILSGSSADAIDHDARRNGRRLFWDAFSRRSSRRLGDSPTIVFSTGGADDPGSQDRWLVDFGSDLSNDGVGGASGYMGSRIHRFNERMRHSRSEIWERLRGGFDEIGRWNSCPLGLHADGMCSCESSPMAEESSTRASISRIVMLAEALFEVLDEIHRQPGSLSLSMVSLPAPESIVDSFPLRSHKKVDVVDGGNDVEQCYICLAEYEEGDQIRVLPCFHEYHKSCVDKWLKEIHGVCPLCRGNVCGGFTESSAHSEVQSH 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02252 527 MobiDBLite consensus disorder prediction 179 204 - -
Cca11g02252 527 MobiDBLite consensus disorder prediction 216 236 - -
Cca11g02252 527 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 525 - -
Cca11g02252 527 MobiDBLite consensus disorder prediction 130 165 - -
Cca11g02252 527 MobiDBLite consensus disorder prediction 73 110 - -
Cca11g02252 527 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 525 - -
Cca11g02252 527 ProSiteProfiles Zinc finger RING-type profile. 466 508 IPR001841 -
Cca11g02252 527 CDD RING-H2_PA-TM-RING 465 508 - -
Cca11g02252 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 512 IPR013083 -
Cca11g02252 527 SUPERFAMILY RING/U-box 448 511 - -
Cca11g02252 527 MobiDBLite consensus disorder prediction 125 165 - -
Cca11g02252 527 SMART ring_2 466 507 IPR001841 -
Cca11g02252 527 Pfam Ring finger domain 465 508 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02252 Cca-Chr11 48800137 48804520 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02252 342 512 C3H Transcription Factor Family AT5G45290 48.438 1.02e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02252 - - gmx:100783604 899.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02252 11 48800137 48804520 Cca11g02252 11 48800137 48804520 ECH