Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02249 ATGTGTGTGCAAGATGGAGAGCAAGTTGATGAAGACATAGAGAAGAACGTTGATAATAACAGAAGGATGCCATGGCCTTTGCATTGTGATCTCTTGCATGCCCACATGGATAACAGGGAAAAAGACTCTTCTTTTAGAACTCCCTCTGACCAGATCAGTGTTGCAAATTCATTTCCTCTGGAAAGCATATGTGAGGATGCAGAAATTGTGGACAAGAAACAGAACCTGATGAACTTTGTTCCTACTCTTCGGTCTGGAGAGTGGTCTGATATTGGAGATCGCCATTCCATGGAGGATACCCACATATGCATTGGAGACTTGGTAGAAAAATTTGGCAATAACGTACTTTGTGACGAAGCTATTTCCTTTTATGGTGTATTTGATGGGCACGGAGGGAAGAGTGCCGCACAATTTGTTCGTGATCATCTGCCTCGGGTGATTGttgaggacgcagactttccattggaacttgagaaggttgtcaaaaggtcatttttggagactgatgcagagtttgcaaggacgtgttctctcgagtcttctggtacaactgcactgactgcaattaTATTTGGAAGGTCTTTACTTGTAGCCAATGCTGGAGACTGCCGTGCTGTGTTGTCCCGTGGTGGAGGGGCCATAGAAATGTCCAAAGATCATAGGCCATTGTGCATTAAAGAAAGGATGAGGATTGAGTCCCTTGGTGGATACGTAGACGATGGTTACCTGAACGGCCAGTTAGGCGTGACTCGTGCTCTAGGTGACTGGCATCTTGAAGGAATGAAGGAAATGAATGGAAAGGGTGGACCATTGAGTGCTGAGCCTGAGCTTAAATTGATGACATTGACCAAAGAAGATGAGTTCTTGATAATTGGCAGTGATGGAATATGGGATGTTTTCCGCAGCCAAAATGCTGTGGACTTTGCTCGAAGGAGGCTTCAAGAGCACAATGATGTGAAGCAGTGTTGCAAGGAGATAATAGGGGAAGCAATAAAGAGAGGTGCAACGGACAACTTGACAGTGGTGATGATATGTTTCCATTCTGAACCACCACCTCCTGTTGTTGTAGAAAGGCCTAGAGTCAGAAGAAGCATATCTGCTGAGGGACTTCAAAATCTAAAATGCTTGCTAGAAGGATAG 1140 0.3974 MCVQDGEQVDEDIEKNVDNNRRMPWPLHCDLLHAHMDNREKDSSFRTPSDQISVANSFPLESICEDAEIVDKKQNLMNFVPTLRSGEWSDIGDRHSMEDTHICIGDLVEKFGNNVLCDEAISFYGVFDGHGGKSAAQFVRDHLPRVIVEDADFPLELEKVVKRSFLETDAEFARTCSLESSGTTALTAIIFGRSLLVANAGDCRAVLSRGGGAIEMSKDHRPLCIKERMRIESLGGYVDDGYLNGQLGVTRALGDWHLEGMKEMNGKGGPLSAEPELKLMTLTKEDEFLIIGSDGIWDVFRSQNAVDFARRRLQEHNDVKQCCKEIIGEAIKRGATDNLTVVMICFHSEPPPPVVVERPRVRRSISAEGLQNLKCLLEG 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02249 379 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 367 - -
Cca11g02249 379 PANTHER PROTEIN PHOSPHATASE 2C 1 367 IPR015655 GO:0004722|GO:0006470
Cca11g02249 379 Gene3D - 67 350 IPR036457 -
Cca11g02249 379 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169
Cca11g02249 379 ProSiteProfiles PPM-type phosphatase domain profile. 84 346 IPR001932 -
Cca11g02249 379 SUPERFAMILY PP2C-like 75 348 IPR036457 -
Cca11g02249 379 CDD PP2Cc 84 346 IPR001932 -
Cca11g02249 379 Pfam Protein phosphatase 2C 94 338 IPR001932 -
Cca11g02249 379 SMART PP2C_4 74 344 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02249 Cca-Chr11 48780181 48784040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02249 43 379 PP2C-type Phosphatase Gene Family AT2G25620 57.558 1.51e-133 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Cca11g02249 PP2C 1.6e-68 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02249 K14803 - gmx:100782648 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02249 11 48780181 48784040 Cca11g02249 11 48780181 48784040 ECH