Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02248 ATGGCTGAGCAGACCGAGAAGGCTTTTCTGAAGCAACCCAAAGTGTTTTTATGCTCGAAGAAAACTGGTAAGGGGAAGAGGCCTGGAAAAGGTGGGAACCGCTTCTGGAAATCGATTGGTCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGGTACCTATATCGACAAGAAGTGTCCCTTCACCGGCAATGTTTCCATCCGTGGCCGTATCCTGGCTGGAACATGCCACAGTGCTAAAATGAATCGCACTATCATAGTTAGGAGGAATTATCTCCATTTTATTAAGAAGTACCAAAGATATGAGAAGAGGCACTCAAATATTCCGGCTCATATATCACCTGCCTTCCGTGTGAAGGAAGGAGATCACGTTATTATTGGTCAATGCAGGCCACTCTCAAAGACGGTGAGGTTCAATGTGTTGAAGGTGATCCCAGCTGGATCGTCTAGTGGTGCGAAGAAGGCATTTACTGGAATTTGA 480 0.4604 MAEQTEKAFLKQPKVFLCSKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGI 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02248 159 Gene3D - 1 158 - -
Cca11g02248 159 PRINTS Ribosomal protein S17 family signature 88 111 IPR000266 GO:0003735|GO:0005840|GO:0006412
Cca11g02248 159 PRINTS Ribosomal protein S17 family signature 121 131 IPR000266 GO:0003735|GO:0005840|GO:0006412
Cca11g02248 159 PRINTS Ribosomal protein S17 family signature 131 138 IPR000266 GO:0003735|GO:0005840|GO:0006412
Cca11g02248 159 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
Cca11g02248 159 PANTHER 40S RIBOSOMAL PROTEIN S11-1-RELATED 1 159 - -
Cca11g02248 159 ProSitePatterns Ribosomal protein S17 signature. 121 133 IPR019979 GO:0003735|GO:0005840|GO:0006412
Cca11g02248 159 TIGRFAM uS17_arch: ribosomal protein uS17 54 143 IPR028333 -
Cca11g02248 159 Pfam Ribosomal protein S17 74 142 IPR000266 GO:0003735|GO:0005840|GO:0006412
Cca11g02248 159 SUPERFAMILY Nucleic acid-binding proteins 68 147 IPR012340 -
Cca11g02248 159 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 159 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02248 Cca-Chr11 48759834 48762036 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02248 1 159 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 89.308 1.04e-96 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02248 K02949 - gmx:100784140 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02248 11 48759834 48762036 Cca11g02248 11 48759834 48762036 ECH