Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02247 ATGACACTCCTCATCCTCAGGGTATTACGTGGTACGTGGAGAATGGGAATTAATGGTGCCGAAAAGATCCCTAACATTAACAATGCTGAAAGTTCAGAAACCACAATTGAGATAAAGATTAAAACATTAGATTCTCAAACTTACACCCTCAGAGTGGATAAACAGATGCCAGTCCCTGCTCTGAAAGAACAGATTGCTTCTGTAACTGGAGTGCTATCTGAACGACAACGCTTAATTTGCCAAGGGAAAGTTCTAAAGGATGATCAGCTCCTGTCTGCCTATCATGTTGAAGATGGTCACACCTTGCATCTGGTTGTGAGGCAACCTGATTTACCACCACCAGGAAGTGTGCTCAATCATTCAGTGTCTGAACCAAATTCAAGCACAAGCCATGGTCACAGTACTCAAGTAGCCCCTGGTGTTTTTATTGAAACTTTCAATGTGCCTGTGCAGGGTGATGGAGTTCATCCTGAAATCAATAGGATAGTTTCTGCTGTTCTAGGATCCTTTGGACTTCCAAATTTTGCCAGTGGTGGTGAAGGGATTGATGTCAGGGAGCATGATTCCCAAGGCTCTGGAAGAACTTCAGGTTCTAGTGGAATATTAGTTTCATCTCATCCTCAGCCCGAACAATCTGGTTTGCGGATTTTGTCTGATAGATCGCGTAATACTTTTGGACCTCCAGCACCAGTATCTCTAGGGTCTTTGCAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTGTCCCAATACTTAAGTCATATAAGCCATGAATTTGATGCAATTGTCAGAGAAGGGGGGGATAATGCCCAAGCAGGCGAGTCTCGAAGGAATGAAGAAATTGGATCTGTTTCTTTACGTTCAGGTTCAACTACAGAAGGGCTTTCATCACCCACATCCTTGGCAGAAGTTTTACTTTCTACCAGACGAATGATCACTGAACAAGCTGACCAGTGTCTACTTCAACTATCAAGACAGCTGGAGAATCAAGCAGATGTGACTGATCCCTTGGTGCGGTCAAGCATTCAGTCAAGGGCTATGAGAACTGGAGTTTTGTTTTATAACCTTGGTGCATTTTTACTTGAGCTTGGTCGCACAACCATGACCCTGCGTTTGGGTCAAACACCGTCTGAAGCTGTAGTTAATGGTGGGCCTGCAGTTTTTATATCCCCAAATGGTCCTAACCATATCATGGTTCAGCCCCTTCCTTTTCAACCTGGAGCAAGCTTTGGTGCTGTCCCGGTGGGAGCTGCGCAGTCTAACTCAACTTTAGGTAGTGGACTTGGCTCAAGCTATTTCCCAAGGCGTATAGATATACAGATACGGCGAGGTACCTCAACAACCTCATCCAATACCAATCAAGAAGAACGTAATGATATACAATCAGCTTCAGTACAAAGAAATCCAGGTGAAAGTTCTGTTAATCAGGCTATCTCTAGGCGTCCAGATTCATCTATTGCTGGGGAGTCAGGAGTAAGGTTAGTGCCAATTAGAACCATGGTTGCAGCAGTACCAGGCCCCTTAGGGCGCCCACCTTCAGAATCATCTGGTAATTCTATAGGGCTTTACTATCCAATTCTTGGGAGATTTCAACATGTATCTTCTGGCCATGCAAATAGTGAACAGGTAGCTCAACAATCAAGTCAACAGCGTGCTGCGGTACTGTCAACTCCTGAATCCATGTTGCAAAGGCAAAACACGGATGATTCTGCGAGGAATGGATCCTCATCAACTCCAAGCACGAGACAAGAACCATCAAATTCTCGTGTTGTAAATATCAATATTCTGGCAGCTAGTGGATCCCAAAACAACCAAGAATCTGAGAGACAAATACCAAGCAGTAGTCTGAGGGGAATCCTTCAGAAGATCATATGGCTCAAGATTCTTCAACCCAGGTTGAAACTGATGTGGGGACATCACGCAGACAGAATGATTCTGATCCAAGCCCCCCAAATCCAAAACGTCAAAAGATGGAATGATATAGAGGACCACGTTCAGTTTGCGGTCGTGGAAGATTGTGATCATAAGAAACAGAATTCGGGTGGATCTCAAGAAGTCAATTTGGTATTATGTGCTTACCTAGTTTTCTATATCAAGCGTGATTTCATTTTCTCCTGCTATAGACAAACCTTTAGAAGGCTGCTCTTCGAACGGACATCTTGTACACTATTGGCATTGGAATTGAGCTTCCCTTCAGTTCGATTTATGCTTGGAATTGGATATGCTCTTGTAGCTGAAATCCTTGCTTTGAAGGAAGGTGTTTGCAGAGCTTGGGATTGGGGAACTACCATGCTAAAGGGTTGGAACGAGTCTCTTGCTCATTACTCGATATGTCAATTTCGTGGCACATACTTCGGCAACTCGCATAATTCAGATTACACGGGGGTCACGGAgtttgtgttatgggattccgcttctgcctcttaa 2427 0.4351 MTLLILRVLRGTWRMGINGAEKIPNINNAESSETTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSERQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRQPDLPPPGSVLNHSVSEPNSSTSHGHSTQVAPGVFIETFNVPVQGDGVHPEINRIVSAVLGSFGLPNFASGGEGIDVREHDSQGSGRTSGSSGILVSSHPQPEQSGLRILSDRSRNTFGPPAPVSLGSLQPPVIPDSLTTLSQYLSHISHEFDAIVREGGDNAQAGESRRNEEIGSVSLRSGSTTEGLSSPTSLAEVLLSTRRMITEQADQCLLQLSRQLENQADVTDPLVRSSIQSRAMRTGVLFYNLGAFLLELGRTTMTLRLGQTPSEAVVNGGPAVFISPNGPNHIMVQPLPFQPGASFGAVPVGAAQSNSTLGSGLGSSYFPRRIDIQIRRGTSTTSSNTNQEERNDIQSASVQRNPGESSVNQAISRRPDSSIAGESGVRLVPIRTMVAAVPGPLGRPPSESSGNSIGLYYPILGRFQHVSSGHANSEQVAQQSSQQRAAVLSTPESMLQRQNTDDSARNGSSSTPSTRQEPSNSRVVNINILAASGSQNNQESERQIPSSSLRGILQKIIWLKILQPRLKLMWGHHADRMILIQAPQIQNVKRWNDIEDHVQFAVVEDCDHKKQNSGGSQEVNLVLCAYLVFYIKRDFIFSCYRQTFRRLLFERTSCTLLALELSFPSVRFMLGIGYALVAEILALKEGVCRAWDWGTTMLKGWNESLAHYSICQFRGTYFGNSHNSDYTGVTEFVLWDSASAS 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02247 808 MobiDBLite consensus disorder prediction 537 589 - -
Cca11g02247 808 PRINTS Ubiquitin signature 46 66 IPR019956 -
Cca11g02247 808 PRINTS Ubiquitin signature 67 87 IPR019956 -
Cca11g02247 808 PRINTS Ubiquitin signature 88 109 IPR019956 -
Cca11g02247 808 MobiDBLite consensus disorder prediction 113 135 - -
Cca11g02247 808 Gene3D - 28 124 - -
Cca11g02247 808 Pfam Ubiquitin family 38 108 IPR000626 GO:0005515
Cca11g02247 808 MobiDBLite consensus disorder prediction 442 483 - -
Cca11g02247 808 MobiDBLite consensus disorder prediction 119 135 - -
Cca11g02247 808 MobiDBLite consensus disorder prediction 268 295 - -
Cca11g02247 808 MobiDBLite consensus disorder prediction 276 295 - -
Cca11g02247 808 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 15 616 - -
Cca11g02247 808 SMART ubq_7 36 107 IPR000626 GO:0005515
Cca11g02247 808 MobiDBLite consensus disorder prediction 442 491 - -
Cca11g02247 808 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 15 616 - -
Cca11g02247 808 MobiDBLite consensus disorder prediction 191 219 - -
Cca11g02247 808 SUPERFAMILY Ubiquitin-like 31 115 IPR029071 -
Cca11g02247 808 MobiDBLite consensus disorder prediction 181 237 - -
Cca11g02247 808 ProSiteProfiles Ubiquitin domain profile. 36 111 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02247 Cca-Chr11 48742848 48756263 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02247 36 107 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 6.40e-09 53.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02247 11 48742848 48756263 Cca11g02247 11 48742848 48756263 ECH