Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02236 ATGGGGAAGAAAAAGAAGCAGGTAGGAGAAATAAGGGAGGATGGTAAAGTGGGAGATAGTGGCCCCGGAGCATATGACAATGATACTATGGTATTTATATCCATGTCTCAAGAATTGAAGAATGAGGGGAACAAGCTGTTCCAAAAGAGGGATCTTGAAGGGGCTCTGCTGAAATATGAGAAAGCCCTCAAGTTGCTTCCGAAAAATCATATTGATGTGTCCTATCTACGTAGCAACATGGCTGCATGTTACATGCAAATGGGACTCAGTGAGTTCCCTAGGGCTATACATGAATGTGATTTGGCTCTTGAGGTAACTCCGAAATATAGTAAAGCTCTGTTGAAGAGGGCAAGGTGCTATGAGGCTTTAAATAGGCTCGATTTAGCTCTGAGAGATGTCACCACTGTTGTGAAGATGGAGCCAAATAATCTCATGGCATTGGAGATCTTAGAAAAGGTGAAAAATGTTCTTGAGGAGAAAGGGTTGAGAGTAGATGATACAATAATTGAGTTGTCTCCTGATTATGTTGAACCTCCTAATGCTTTGCCTCCAGAAAAGGTATTGAAAGAGAAGACACGCAAGAAGAAGGCCAATAGAGAGGAAGAGAAAGCTCCTGATGAGAAAATTCTAGAAAAGCAAACTGAGGAGAAATTTGAGGAGAAGAAGGCTGAGGGTGGGGGCAGTGTTATAGTTGTAGAGAAGAAGATCAATGCGTCCAAGAAGAAGAAGGCCAAGGAAAAAATTGACGAGAAGAAGGCCGAAATCAAGGAAGTTATTGAGGAAAGAAGTAATGGTAGAAGGGAAGATGTTCCTAAGAAAACAGCTAAACTTATTTTTGGTGATGATATAAGATGCACTGAAATTCCATTTAATTGTAGCCTTTTCCAGTTAAGAGAAGTTATTTATGATCGATTCCCAAGCCTAGGAGCTGTTCTTGTCAAATACAGAGACCAAGAAGGTGACTTGGTCACGATCACTTCTGATGATGAATTAAGGTGGGCTGAAACAGAATCTCATGGTTCTATGCGGCTGTACATCGTAGAAGCTACTCCTGAGCAGGATCTACTTTTTGAGAAACTTAAAGTAAAGGTGGGGAAAATGGTTAGCATTAATGGTGCATCTGAGAATGGTTGTGTGGGAAAAGCAAAGGAAATTGTTGGTTCTTCTTGCATTGAGGATTGGATAATTCAGTTTGCCAAGCTGTTCAAGAACCATGTTGGGTTTGAATCTGACAGATATTTGGATTTTCATGAACTTGGGATGAAGCTCTATTCTGAGGCTTTGGAGGAGACTGTTACAAGTGAAGAAGCACAAGGCCTATTTGACATGGCAGGTGATAAGTTCCAAGAGATGACTGCTCTTGCATTGTTCAACTGGGGAAATGTGCATATGTCTAGGGCAAGGAAGAAAGTATATTTCAGAGAAGATTCTTCTAAAGAGCAACTATGTGAACAAATCAAAAGTTCATATGAATGGGCACTGGAAGAATATTCAAAAGCAGGAGAAAAATATGAAGCAGCCATTAAGATTAAGTCAGATTTTCATGAAGGCTTCCTGGCACTAGGGCTGCAGCAGTTTGAGCAAGCAAAACTTTCTTGGTATCATGCACTCAGTGGTAATGTAGATTTGCTGACATGGCCTTCCACTGAGGTTCTTCATCTTTACAACAATGCGGAGGAAAATATGGAGAAAGGAATGCAGATGTGGGAAGAATCAGAAAAGCAGAACTTGAGTAAAACATTTGAATCAAATGATGTTAAAGTACATTTGCAAAACACGGGGTTGGATGGGATTTTGAAAAATGTATCCTTAGATGAACTTGCCGCACAGGAGACACATATGAGGTCTCAAATAAACCTCCTATGGGGTACCATGCTATATGAACGCTCAATTGTTGAATTCAAATTAGGGCTACCAATATGGCATGAATCTCTTGAAGTGGCAATCAATAAGTTTGAACTTGCAGGAGCTTCTCCAACAGATATAGCTGTAATTTTGAAGAATCACTGTTCAAATGATACTGCAGTAGATGGTCTTGCCTTCAAAATTGATGAAATAGTACAGGCATGGAATGAGATGTACAAAGCTAAAAAGTGGCAGGGTGGAGTTCCATCATTTCGTTTGGAACCCTTGTTTAGAAGGCGAGTTTCAAAAATTTATCATGCCTTTGAGCTTGCATGA 2181 0.4021 MGKKKKQVGEIREDGKVGDSGPGAYDNDTMVFISMSQELKNEGNKLFQKRDLEGALLKYEKALKLLPKNHIDVSYLRSNMAACYMQMGLSEFPRAIHECDLALEVTPKYSKALLKRARCYEALNRLDLALRDVTTVVKMEPNNLMALEILEKVKNVLEEKGLRVDDTIIELSPDYVEPPNALPPEKVLKEKTRKKKANREEEKAPDEKILEKQTEEKFEEKKAEGGGSVIVVEKKINASKKKKAKEKIDEKKAEIKEVIEERSNGRREDVPKKTAKLIFGDDIRCTEIPFNCSLFQLREVIYDRFPSLGAVLVKYRDQEGDLVTITSDDELRWAETESHGSMRLYIVEATPEQDLLFEKLKVKVGKMVSINGASENGCVGKAKEIVGSSCIEDWIIQFAKLFKNHVGFESDRYLDFHELGMKLYSEALEETVTSEEAQGLFDMAGDKFQEMTALALFNWGNVHMSRARKKVYFREDSSKEQLCEQIKSSYEWALEEYSKAGEKYEAAIKIKSDFHEGFLALGLQQFEQAKLSWYHALSGNVDLLTWPSTEVLHLYNNAEENMEKGMQMWEESEKQNLSKTFESNDVKVHLQNTGLDGILKNVSLDELAAQETHMRSQINLLWGTMLYERSIVEFKLGLPIWHESLEVAINKFELAGASPTDIAVILKNHCSNDTAVDGLAFKIDEIVQAWNEMYKAKKWQGGVPSFRLEPLFRRRVSKIYHAFELA 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02236 726 Pfam PB1 domain 274 348 IPR000270 GO:0005515
Cca11g02236 726 ProSiteProfiles TPR repeat profile. 110 143 IPR019734 GO:0005515
Cca11g02236 726 Gene3D - 268 349 - -
Cca11g02236 726 CDD PB1 276 346 - -
Cca11g02236 726 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Cca11g02236 726 Coils Coil 241 268 - -
Cca11g02236 726 MobiDBLite consensus disorder prediction 175 220 - -
Cca11g02236 726 SUPERFAMILY TPR-like 37 531 IPR011990 GO:0005515
Cca11g02236 726 MobiDBLite consensus disorder prediction 1 23 - -
Cca11g02236 726 Gene3D Tetratricopeptide repeat domain 34 164 IPR011990 GO:0005515
Cca11g02236 726 PANTHER PROTEIN CLMP1 3 725 IPR044517 -
Cca11g02236 726 MobiDBLite consensus disorder prediction 1 19 - -
Cca11g02236 726 SMART tpr_5 36 69 IPR019734 GO:0005515
Cca11g02236 726 SMART tpr_5 110 143 IPR019734 GO:0005515
Cca11g02236 726 SMART tpr_5 74 109 IPR019734 GO:0005515
Cca11g02236 726 SMART PB1_new 272 349 IPR000270 GO:0005515
Cca11g02236 726 MobiDBLite consensus disorder prediction 184 220 - -
Cca11g02236 726 PANTHER PROTEIN PHOX3 3 725 - -
Cca11g02236 726 SUPERFAMILY CAD & PB1 domains 274 353 - -
Cca11g02236 726 ProSiteProfiles PB1 domain profile. 272 349 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02236 Cca-Chr11 48607168 48611842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02236 24 143 Calmodulin-binding Proteins AT3G25230 30.597 4.57e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02236 - - gmx:100807387 1203.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02236 11 48607168 48611842 Cca11g02236 11 48607168 48611842 ECH