Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02216 ATGGAGACTCCGAATCTCTCATTCGTCGACCTTTGTTATCTTCCCAAAGATCCATCATCAACTCCTCCTCCCAGGTCGCCATCGTCGGCTCCAATGTCAGCCCAATTGAGAGCCTCGACTACGAGTCCGTCTTTCCTTCTTTTTTCCATCTGGGTCTTTTTCCTTTCTCTAAAGTTTGAGTCTTTTCCCTCACGCGGTTACGGGTCTCGCTCTTTCTTTTTGTTCTGGGTGTGCAGGGTTTGCgagaacgagttcgtgaagcatgattggaggagaagtgggaaggcgcaaatatttcagttcattttcatgaagtggctcttgtgctttctcattggcatgatcgtttgccttgttgggttttgcaacaatctcgccgtggagaatctcgccggcatcaaGTTCGTGGTCACTTCCAATATGATGTTGGAGAGTAGGTTTCTGTGGGCCTTTTTAGTATTTTTTGTTTCAAATTTAGTTCTCACGCTTTTTGCTGCCACAATCACGGCTTTGATAGCACCTACTGCCACCGGTTCGGGTATACCTGAGGTGAAGGCTTACCTAAATGGTGTGGACGCGCCTGGAATATTTACTATACGAACTCTGATTGTTAAGATTATTGGAAGCATTACAGCGGTGTCATCATCACTTCTTATCGGGAAGGCAGGGCCTATGGTGCATACGGGTGCATGCGTGGCAGCATTGTTAGGTCAGGGTGGATCAAAGAGATATGGGTTAACCTGGAAATGGTTTCAGTTTTTTAAGAATGACCGAGACCGGAGAGATCTAATAATATGTGGATCAGCAGCTGGAATTGCGGCTGCCTTTCGTGCCCCTGTTGGTGGTGTGTTATTTGCTCTTGAAGGGATGACATCTTGGTGGAGAAGTGCCCTTCTGTGGAGAGCTTTCTTCACAGCAGCAATAGTTGCAATTTTGCTTCGTGCCATGATTGACTTATGTTTAAGTGGTAGATGTGGGTTATTTGGTAAAGGGGGACTAATAATGTTTGATGCTTATTCAGCAAGTGTTTCGTATCATTTGGTGGACATTCCTCCTGTCTTTATTCTCGGTGTTATAGGTGGGATACTTGGAAGCTTATTTAATTTGATATTGAGCAAAGTTCTTCGCATATACAATTTTATCAACgaGAAAGGCACCATTTTCAAAATTTTGCTTGCCTGTGTTATTTCCATTTTTACATCCTGTCTTCTTTTTGGATTGCCATGGTTGACATCTTGCCGACCATGTCCACCTGATCCAACTGAGCCTTGTCCTACAATaggtcggtctggtatctacaagaaattccagtgccctcCCAATCACTACAATGATCTTGCCAGCCTCATTTTCAATACAAATGATGATGCTATCAGAAATCTATTTAGCAAGAATACTGATGATGAGTTTGAGGTTAAATCAGTGCTCATCTTTTTCATCATGTGCTTTTTTTTAAGTATATTTAGCTATGGAGTTGTTGCACCAGCTGGTCTTTTTGTGCCAGTTATTGTGACTGGTGCATCTTATGGGCGCATTGTTGGAATGTTGCTTGGCAAAAATTCCAATCTTAACCATGGTCTTTATGCTGTACTTGGTGCTGCTTCTTTTCTCGGTGGATCCATGAGGACAACGGTTTCTCTATGTGTAATTATTCTAGAACTGACCAATAACCTGTTATTGCTACCCTTAATCATGATGGTGCTGTTCATATCTAAGACTGTAGCAGACGCTTTCAATGCAAATATATATGACATTATAATGAAAGCCAAGGGTTTGCCTTATTTAGGAACTCATGCTGAACTATATACAAGGCAGCTAACAGTAGGCGATGTAGTCACAGGCCCCCTTCAGACGTTTAATGGCATTGAGAAGGTTCGTAACATAGTGTTTATTCTCAAAACTACTGGACATAACGGGTTTCCTGTTATAGATGAGCCTCCTATTTCGGAAGCTCCAGTTTTATTTGGCATAATCCTACGTGACCATCTTCTCACATTGTTGAAGAAGAAAGCTTTTTTGTCCTTACCTGTTGCATCAAGTAATGAAGTCTTCAACAAGTTTTCAGCTGATGATTTTGCAAAGAAGGGTTCAAGCAGAGTTACTCTAAAGATAGAGGATATTCTGTTATCGGAGGAAGAGTTGGACATGTTCATAGATTTACATCCATTTGCTAATGCTTCTCCTTATACTGTTGTGGAGACAATGTCACTGGGAAAGGCCCTTGCTCTTTTTCGAGGGCTTGGTTTAAGGCATCTGCTAGTGGTACCCAAGTTCTCCGGTAGATCACCTGTGGTGGGTATACTCACGCGGCACGATTTCATGCCAGAACATATATTGGGTTTGCATCCGTTTTTGGCAAGAAACAGGGGGAAAAGATTAAGATTTTTTAGCACCCTTGCGTAG 2403 0.3866 METPNLSFVDLCYLPKDPSSTPPPRSPSSAPMSAQLRASTTSPSFLLFSIWVFFLSLKFESFPSRGYGSRSFFLFWVCRVCENEFVKHDWRRSGKAQIFQFIFMKWLLCFLIGMIVCLVGFCNNLAVENLAGIKFVVTSNMMLESRFLWAFLVFFVSNLVLTLFAATITALIAPTATGSGIPEVKAYLNGVDAPGIFTIRTLIVKIIGSITAVSSSLLIGKAGPMVHTGACVAALLGQGGSKRYGLTWKWFQFFKNDRDRRDLIICGSAAGIAAAFRAPVGGVLFALEGMTSWWRSALLWRAFFTAAIVAILLRAMIDLCLSGRCGLFGKGGLIMFDAYSASVSYHLVDIPPVFILGVIGGILGSLFNLILSKVLRIYNFINEKGTIFKILLACVISIFTSCLLFGLPWLTSCRPCPPDPTEPCPTIGRSGIYKKFQCPPNHYNDLASLIFNTNDDAIRNLFSKNTDDEFEVKSVLIFFIMCFFLSIFSYGVVAPAGLFVPVIVTGASYGRIVGMLLGKNSNLNHGLYAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLFISKTVADAFNANIYDIIMKAKGLPYLGTHAELYTRQLTVGDVVTGPLQTFNGIEKVRNIVFILKTTGHNGFPVIDEPPISEAPVLFGIILRDHLLTLLKKKAFLSLPVASSNEVFNKFSADDFAKKGSSRVTLKIEDILLSEEELDMFIDLHPFANASPYTVVETMSLGKALALFRGLGLRHLLVVPKFSGRSPVVGILTRHDFMPEHILGLHPFLARNRGKRLRFFSTLA 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02216 800 Gene3D Clc chloride channel 97 595 - -
Cca11g02216 800 Gene3D - 596 775 IPR046342 -
Cca11g02216 800 Pfam CBS domain 727 773 IPR000644 -
Cca11g02216 800 PANTHER CHLORIDE CHANNEL PROTEIN 80 795 - -
Cca11g02216 800 ProSiteProfiles CBS domain profile. 724 784 IPR000644 -
Cca11g02216 800 Pfam Voltage gated chloride channel 162 576 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca11g02216 800 PRINTS Chloride channel signature 494 514 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca11g02216 800 PRINTS Chloride channel signature 174 191 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca11g02216 800 PRINTS Chloride channel signature 269 288 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca11g02216 800 PRINTS Chloride channel signature 526 542 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca11g02216 800 PRINTS Chloride channel signature 544 563 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca11g02216 800 PRINTS Chloride channel signature 205 224 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca11g02216 800 PRINTS Chloride channel signature 582 596 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca11g02216 800 PRINTS Plant CLC chloride channel signature 322 329 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cca11g02216 800 PRINTS Plant CLC chloride channel signature 304 314 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cca11g02216 800 PRINTS Plant CLC chloride channel signature 290 298 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cca11g02216 800 PRINTS Plant CLC chloride channel signature 446 462 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cca11g02216 800 CDD CBS_pair_voltage-gated_CLC_euk_bac 607 776 - -
Cca11g02216 800 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 80 795 - -
Cca11g02216 800 SUPERFAMILY CBS-domain pair 600 774 IPR046342 -
Cca11g02216 800 SUPERFAMILY Clc chloride channel 83 597 IPR014743 -
Cca11g02216 800 SMART cbs_1 727 778 IPR000644 -
Cca11g02216 800 SMART cbs_1 615 668 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02216 Cca-Chr11 48333598 48339499 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02216 79 797 Ion Channels AT5G33280 74.550 0.0 1073
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02216 K05016 - gmx:100817901 1236.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02216 11 48333598 48339499 Cca11g02216 11 48333598 48339499 ECH