Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02215 ATGATGGCTATCACTGCTTTATTTTTGGTGCTATTGCTGCAATTGTCGACAATTTTAGGCTCTGAGGTTGTGTTACAGTCAAGGGATTGTGGCACTGATTGGGTGGGACATTCATATTCTAGTCATGGCCAGGAACTGTTCTACATAAACGGCAATGTAGTGAACAAGGTTGCTTTTTGTGAAGCTCTTCAATTGTATATTGCAAAGGGGTGTGATGTGAAGGACTACTTTGGAAGTGTCAAATGTGTGACGGATGTCTCTTTTGGGAATTTACCTTTAAAGGCGGGGAGGAAACTTTTGCAGAAGGATTTAAACAGTGAATCCACATCACAAGAAGATTCCAAGCCTCTTTCAAGCAAGGTAGTTGGTATGTATGCAGGGGGAGCTATGTTGGTATGTTGTGCTGTTCTTTGTCCTTGTTTCTTTGCCAAGAGACGGAAAGCAACTTCTCATACTGTTCTCGCCAAGGACCCAATTTCAATGGATTCAGTTTCCTCCTTTGAAGCTTCCGTTAATGATAAGGTTCTGGCAAGTCCACTTCGCGTGCCACCTAGTCCAGCAAGATACTCAACGTCTCCAAAAATCAGTAGACTTCAATCATTGCATCTCAATCTGAACCAAGTTACAAGAGCTACCCATAACTTCTCAGAATCATTACAAATAGGAGAAGGAGGTTTTGGAACTGTCTACAAGGCCAAGTTGGAAGATGGCTTGACTGTGGCTGTAAAACGAGCAAAAAAGGAGCATTTTGATAGTTTGAGAACAGAATTCAGCAGTGAAGTTCAACTTTTGGCCAAAATTGATCACCGGAACCTGGTGAAGCTATTAGGTTATATTGACAAAGGAAACGAACGTCTTCTTATTACTGAGTATGTGCCAAATGGTACTCTTAGAGAACATTTGGATGGTCAACGTGGAAAAATCCTAGACTTCAATCAGCGCCTTGAAATAGCAATTGATGTTGCTCATGGCTTGACCTATCTGCATCTGTATGCTGAAAAGCAaattatccatcgagatgtgaaatcatccaacattcttctgacagaaagcatgcgagctaaggttgctgattttggatttgcaaggcaagggccagtgaacactgatcaaacacacatttctactaaagtgaagggaacagttggttatttggaccctgagtatatgaaaacataccaactcactcccaagagtgacgtttactcatttggaattttgcttctagaaattgtgACTGGCCGCCGTCCTGTTGAGTTGAAGAAAACTGTTGAAGAGCGAGTTACACTCAGATGGGCGTTCAGGAAGTATAATGAAGGCAGTGTGGTGGAACTGGTAGATCCTTTGATGGAAGAAGCTGTAAATGCAGATGTTCTGATGAAGATGTTTGATTTGGCATTTCAATGTGCAGCACCCGTTCGAACAGATAGACCTGACATGAAATCCGTGGGCGAGCAATTGTGGGCAATAAGGGCAGATTACCTCAAGAGTGCAAGGAGAGAATAA 1506 0.3599 MMAITALFLVLLLQLSTILGSEVVLQSRDCGTDWVGHSYSSHGQELFYINGNVVNKVAFCEALQLYIAKGCDVKDYFGSVKCVTDVSFGNLPLKAGRKLLQKDLNSESTSQEDSKPLSSKVVGMYAGGAMLVCCAVLCPCFFAKRRKATSHTVLAKDPISMDSVSSFEASVNDKVLASPLRVPPSPARYSTSPKISRLQSLHLNLNQVTRATHNFSESLQIGEGGFGTVYKAKLEDGLTVAVKRAKKEHFDSLRTEFSSEVQLLAKIDHRNLVKLLGYIDKGNERLLITEYVPNGTLREHLDGQRGKILDFNQRLEIAIDVAHGLTYLHLYAEKQIIHRDVKSSNILLTESMRAKVADFGFARQGPVNTDQTHISTKVKGTVGYLDPEYMKTYQLTPKSDVYSFGILLLEIVTGRRPVELKKTVEERVTLRWAFRKYNEGSVVELVDPLMEEAVNADVLMKMFDLAFQCAAPVRTDRPDMKSVGEQLWAIRADYLKSARRE 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02215 501 SUPERFAMILY Protein kinase-like (PK-like) 195 490 IPR011009 -
Cca11g02215 501 CDD STKc_IRAK 221 487 - -
Cca11g02215 501 Gene3D Phosphorylase Kinase; domain 1 185 291 - -
Cca11g02215 501 PANTHER NODULATION RECEPTOR KINASE-LIKE PROTEIN 17 500 - -
Cca11g02215 501 PANTHER OS07G0166700 PROTEIN 17 500 IPR045272 GO:0004714|GO:0006468
Cca11g02215 501 Pfam Protein tyrosine and serine/threonine kinase 220 487 IPR001245 GO:0004672|GO:0006468
Cca11g02215 501 SMART serkin_6 215 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02215 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 336 348 IPR008271 GO:0004672|GO:0006468
Cca11g02215 501 ProSiteProfiles Protein kinase domain profile. 215 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02215 501 Gene3D Transferase(Phosphotransferase) domain 1 292 500 - -
Cca11g02215 501 ProSitePatterns Protein kinases ATP-binding region signature. 221 247 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02215 Cca-Chr11 48328806 48333084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02215 122 491 Receptor kinase-like Gene Family AT3G46290 40.267 1.69e-75 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Cca11g02215 PK_Tyr_Ser-Thr 8.1e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02215 - - gmx:100798260 900.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02215 11 48328806 48333084 Cca11g02215 11 48328806 48333084 ECH