Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02197 ATGAAAGTTGTGACCATGGAGACTGACAAGAAGTGTGGATGCTGGGCTGTCCTTAAACGCGGCGTTAGAGCAACCGAGACAAGATACCTGAATGCTAGCAATCGAGAACTATGTCCTCCCAATGAAGCTCGATTATCTTCTGATAATCCTGATCCCCCATCTCAGGAGAATAAGGCTCCTTGCCAGCTCCTTCAATTCACATTTCATGAACTAAAGGCTGCAACTGGGAATTTCAGACCTGATAGCATTCTTGGGGAGGGTGGCTTTGGTTATGTTTTCAAAGGATGGATTGAGGAAGATGGAACGGCGCCGGCAAAACCTGGGTCAGGGATTACTGTGGCTGTCAAAAGCTTGAAGCCAGATGGTCTTCAGGGCCATAGAGAATGGGTGGCTGAAGTTGACTTTCTTGGACAGCTTCACCATCCTAATCTTGTGAAACTTATTGGTTACTGCATTGAAGATGATCAGCGGCTTCTTGTTTATGAGTTTATGACTCGGGGAAGTCTAGAAAACCATCTTTTCAGAAGAACCGTACCTCTTCCGTGGTCCAACAGGATTAAGATTGCCCTTGGTGCAGCAAAAGGATTAGCTTTCCTCCATAATGGTCCCGAACCAGTCATTTATAGAGATTTTAAAACATCAAACATTTTGCTTGATACGGAGTATAATGCGAAGCTTTCAGATTTCGGTCTAGCAAAAGCAGGGCCTCAAGGAGACAAAACACATGTTTCTACTAGAGTAGTTGGAACTTATGGTTATGCTGCTCCAGAATATGTCATGACAGGACATTTGACAGCTAAAAGTGATGTTTATAGCTTTGGAGTTGTGTTACTTGAGATATTAACAGGAAGAAGATCAATGGACAAAAAGCGTCCGAGTGGGGAACAAAATCTTGTTTCATGGGCTAGGCCATATTTAGCTGACAAGCGAAAACTTTTCCAACTCGTGGATCCTCGCCTCGAACTAAATTATTCTCTTAAAGGAGTGCAGAAAATTTCCCAATTAGCTTATAGTTGCCTCAGTAGAGACCCCAAATCTCGTCCTAACATGGATGAAGTTGTGAAGGCTCTGACTCCATTGCAGGATCTTAATGACTTTGCAATTTTGTCTTATCACTCTCGCTTGTCTCAACAAGGGAGACGAAAGAAGAAAGATGGAACTCCACATATCACATACACACAATCCAAGAGCATCAGGGCTTCTCCCTTGAACACCGGCAAGCAGCATCGATGA 1233 0.4363 MKVVTMETDKKCGCWAVLKRGVRATETRYLNASNRELCPPNEARLSSDNPDPPSQENKAPCQLLQFTFHELKAATGNFRPDSILGEGGFGYVFKGWIEEDGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWSNRIKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLFQLVDPRLELNYSLKGVQKISQLAYSCLSRDPKSRPNMDEVVKALTPLQDLNDFAILSYHSRLSQQGRRKKKDGTPHITYTQSKSIRASPLNTGKQHR 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02197 410 CDD STKc_IRAK 84 360 - -
Cca11g02197 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Cca11g02197 410 Gene3D Transferase(Phosphotransferase) domain 1 164 374 - -
Cca11g02197 410 Gene3D Phosphorylase Kinase; domain 1 53 163 - -
Cca11g02197 410 SUPERFAMILY Protein kinase-like (PK-like) 60 364 IPR011009 -
Cca11g02197 410 MobiDBLite consensus disorder prediction 377 410 - -
Cca11g02197 410 MobiDBLite consensus disorder prediction 38 58 - -
Cca11g02197 410 ProSitePatterns Protein kinases ATP-binding region signature. 84 116 IPR017441 GO:0005524
Cca11g02197 410 ProSiteProfiles Protein kinase domain profile. 78 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02197 410 MobiDBLite consensus disorder prediction 390 410 - -
Cca11g02197 410 PANTHER OS01G0588500 PROTEIN 52 377 - -
Cca11g02197 410 Pfam Protein tyrosine and serine/threonine kinase 82 357 IPR001245 GO:0004672|GO:0006468
Cca11g02197 410 PANTHER OS01G0588500 PROTEIN-RELATED 52 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02197 Cca-Chr11 48017210 48021422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02197 66 372 Glycoside Hydrolase AT3G07070 54.662 9.28e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca11g02197 PK_Tyr_Ser-Thr 6.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02197 - - aprc:113848012 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02197 11 48017210 48021422 Cca11g02197 11 48017210 48021422 ECH