Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02194 ATGGAGCTTCAACTCGCTCTTGCTCTCCCAATCCCAACCAACCCCTCCAACCTCCTCCATCTCAATTCTACCCACAAAAAACGTACCTTCTCCCAACTCTTGGACCATGCACCTCAAACTCTCACTCTCCTCCCTTTGACGCCAAACCACAACATCACCAAGAATGATCATGATGAGGATGTAGAAGCTATAGTGGGTTGGCCACCCGTAAACTACTTGAGGAAGAAACTTCGTGTCGATAATTGTGGGGACGAGGTTGTCGGGAACAATGATCACATGTTACGGCTTGATCATCATCGTCATCACGATCATGGTTCTGATGGCGTTGTAGAATCCAAATCGAATACTCTGTACGTGAAGGTGAAGATGGAGGGCGTGGGAATCGCACGGAAGGTTGATCTCGGCATGCACCAATCGTTTCAGACGCTCAAGGAAACCTTGATGGACATGTTTGGAAAATGCAATCCACAATCAAACACCTATGAGCTGGCTTATCAGGACAAAGAAGGTGATTGGCTTCATGCAGAAGACGTACCATGGAGGAGCTTCGTTCGGTGTGCACGAAGACTCAAATTGGTGAAGAGCAGCACATAA 594 0.4764 MELQLALALPIPTNPSNLLHLNSTHKKRTFSQLLDHAPQTLTLLPLTPNHNITKNDHDEDVEAIVGWPPVNYLRKKLRVDNCGDEVVGNNDHMLRLDHHRHHDHGSDGVVESKSNTLYVKVKMEGVGIARKVDLGMHQSFQTLKETLMDMFGKCNPQSNTYELAYQDKEGDWLHAEDVPWRSFVRCARRLKLVKSST 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02194 197 Gene3D - 110 197 - -
Cca11g02194 197 ProSiteProfiles PB1 domain profile. 116 197 IPR000270 GO:0005515
Cca11g02194 197 SUPERFAMILY CAD & PB1 domains 112 192 - -
Cca11g02194 197 PANTHER AUXIN-RESPONSIVE PROTEIN IAA20 1 195 - -
Cca11g02194 197 Pfam AUX/IAA family 23 153 IPR033389 -
Cca11g02194 197 Pfam AUX/IAA family 158 196 IPR033389 -
Cca11g02194 197 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 195 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02194 Cca-Chr11 47947495 47948663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02194 118 196 B3 DNA Binding Superfamily AT5G20730 32.530 4.50e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Cca11g02194 AUX_IAA 1e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02194 K14484 - gmx:100804096 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02194 11 47947495 47948663 Cca11g02194 11 47947495 47948663 ECH