Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02182 ATGTCGAGCTGCAGTATCGATGTTGCTCCCGAGCAAATTTGCTACATCCCCTGCAACGTTTGCAATTTTGTTCTCGCGGTGAGTGTTCCATGCAGCAGCCTGTTTGACATTGTGACCGTTCGATGCGGACACTGCACCAATCTATGGTCCGTGAACATGGCTGCCGCGTTTCAGTCACTGTCAACTTGGCAAGATGTTCAGGGACCTGGACTCTTGAATCCAGAGTACAAGATTGACACTGGCTCCACGTCCAAATACAACAACAGGATTGCAATGCGTCCACCAACCACTCATGTAACTGAGGAAAGGGTTGTGAACAGGCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAATCAGTTTATAAAGGAAGAGATTCAGAGGATCAAAGCCAATAATCCCGATATCAGTCACAGAGAAGCTTTCAGTACAGCTGCAAAGAACTGGGCACATTTTCCCCACATTCACTTCGGGCTGATGTTGGACAACAACAACCAAGCTAAGATGGAGAATGTCTCCGAGAAGCACTTAATGTCAAGGGCTGCACTGTTGAACAAATGA 564 0.4787 MSSCSIDVAPEQICYIPCNVCNFVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSTWQDVQGPGLLNPEYKIDTGSTSKYNNRIAMRPPTTHVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLDNNNQAKMENVSEKHLMSRAALLNK 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02182 187 Gene3D High mobility group box domain 99 178 IPR036910 -
Cca11g02182 187 PANTHER PROTEIN YABBY 6-RELATED 1 177 IPR006780 GO:0007275
Cca11g02182 187 PANTHER AXIAL REGULATOR YABBY 5 1 177 - -
Cca11g02182 187 Pfam YABBY protein 9 160 IPR006780 GO:0007275
Cca11g02182 187 SUPERFAMILY HMG-box 103 153 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02182 Cca-Chr11 47743693 47747883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02182 8 170 C2C2-YABBY Transcription Factor Family AT2G26580 74.233 1.81e-86 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Cca11g02182 YABBY 2e-67 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02182 K25796 - gmx:100499942 360.533