Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02171 ATGGTGCAATCAAAGAAGTTCAGAGGTGTCAGGCAGCGCCATTGGGGTTCATGGGTATCTGAAATTCGCCACCCTCTTCTGAAGAGAAGGGTGTGGCTAGGGACATTTGAAACAGCAGAAGAAGCGGCTAGGGCGTATGATCAAGCTGCGATTTTGATGAGTGGGAGAAATGCGAAAACGAATTTCCCAATAACACAAACTCCGGAAGGTGACCCGAAGAGCACAACCAGTGAGGAGAGCCCCTCAACCTCGAAGGATTTGGAGGAAATCCTGCATGCAAAGCTTCGAAAATGTGGCAAGGTACCCTCGCCTTCGATGACCTGTTTGAGGCTGGACACAGAGAACTCCCACATCGGAGTGTGGCAAAAGCGCGCTGGGAGGCGTTCTGATTCAAATTGGGTCATGACGGTTCAGCTGGGAAAGAAGAGTGCCAATAACGAGAATGAGACTCTTCGAGCTGATACTAGTTCTTTCCCTTGTTCTGATCTTCACCATGAGTCTCCATCAGTGACGGGCCATAAGGAAGTGGTGGCAACAGAGATTGATGAAGAAGAGAGAATTGCCCTTCAGATGATAGAGGAACTCCTCAACGACAGGAACTGCCCCAGCCCTAGCCATagccccagcccaagcccaagcccaagcccaTCATTTAACAACAACATTCAACCAAGGGATGATGATCGTGACACTGACACCTTTTTTCTTTAA 711 0.4655 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSTTSEESPSTSKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGRRSDSNWVMTVQLGKKSANNENETLRADTSSFPCSDLHHESPSVTGHKEVVATEIDEEERIALQMIEELLNDRNCPSPSHSPSPSPSPSPSFNNNIQPRDDDRDTDTFFL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02171 236 MobiDBLite consensus disorder prediction 60 81 - -
Cca11g02171 236 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Cca11g02171 236 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Cca11g02171 236 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Cca11g02171 236 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Cca11g02171 236 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Cca11g02171 236 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 208 - -
Cca11g02171 236 MobiDBLite consensus disorder prediction 197 236 - -
Cca11g02171 236 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Cca11g02171 236 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Cca11g02171 236 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 208 - -
Cca11g02171 236 MobiDBLite consensus disorder prediction 60 85 - -
Cca11g02171 236 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02171 Cca-Chr11 47583939 47585675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02171 1 197 AP2-EREBP Transcription Factor Family AT1G15360 61.951 3.53e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca11g02171 AP2 9.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02171 - - gmx:100787517 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02171 11 47583939 47585675 Cca03g01566 03 34392103 34393364 ECH
Cca11g02171 11 47583939 47585675 Cca05g00530 05 11992620 11994155 ECH
Cca11g02171 11 47583939 47585675 Cca11g02171 11 47583939 47585675 ECH