Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02169 ATGGCCTTCATAGCGGTTGTGTTGTTCATGTTAATGTTATTGGCAAAAGAAGGCACAGGTGAAAGCATGATTGAGGTGGGGTCTTTGCTCTCTGCTGGAGGCAATGACAGTTCATGGGCATCAAGTTCTGGCCATTTTGCTTTTGGGTTTTACGAGCAAGGTGATGGCTATGCTGTTGGAATATGGTTGGTTGGTGCTCAAAAAACTATTGTCTGGACAGCTGACCGGGATAGCCTTCCACTCTCCTCCAATTCCTCCTTGAACCTCACCACGACTGGCCTGCAGATTTTCCCGAGTCCAAGGGAAGGCCAAGATCCCATCATTTCAAGTTCTACAACAGTAGCTTCTTCAGCTTCTATGCTTGATTCTGGCAACTTTGTGCTCTATGATGAGAACGACACTGTTGTCTGGCAAAGCTTTCATCATCCAACTGACACCATATTAGGAGGTGATGGAAACCTGGTTGCTTACCCTGTCAACAGCCCAGCAACTCCCTTGGATGCTTACTGGGCTTCAAATACTTATACTTCAAATGACCAACTCAGTCTTGACGTTTCAGGCTTTCTTTGCCTCAGCAGCCATCCATGTTTTAACGGTAACATCAGCCACGGAAAGCAATCACACAACATGAGTTCAATCTACCGTGCAACACTTGATGTAGACGGGAACTTGAGATTGTATGAGCACCAATTTGAGGGCAATGGAAGCTCACATGTCCAAATACTGTGGAGCACCTCGCTTGAGAAATGTCAAATCAACGGGGCTTGTGGGTTTAACAGTTACTGCTCAAACGTAACAGGCGAAGCCGTGTGTGAGTGTTTTCCTAGTTTCGTCCCCTCCAAAAGTAGGCATGAGGGTAACGCGTCTCTGCCTCTGGACTGCGTGCTGGTCCACGCAGAAGATGGTTGCCAAAGCAGTGAAGACCCAACGCGTATGTATAATGTCACCGAGTTGGAGAATATGCATTGGGGTGGTGCTATTCCATATTCTGTCGCACCGTTGAAGAAGGAAGAGTGCCAGAAGTCTTTCCTGGAAGATTGTGATTGCATGGCAGTTTTATATTCCGACGGCAACTGCAACAAATACAGACTCCCGCTAGCATATGGCAGACGCAGAACGGTTCAAGATTCAGTAACCGTGGCCTTCTTCAAGGTGCCTTCGGGAATTGTCACTCCAAACAACTCCACACAGAAACCTGGGACTAGGGTCGTCGTGGATAACAAGACGAGACTTATAATGATTATAGCCTTTACTTTGGGTTTCATTTCATTGTTATCTTTGGTACTTGCGCTGTTCGTTTTCTTCACTTATAAACGGCAAGTTTATAGGTATACAACGTTGTCTGCAAGTGAGGGTCTGGGATTTACTGAAGAATGTTCTTTGCGTTCATTTTCTTTTGATGAACTTGAGAAATTCACTGGAGGCTTCACGGAAGAAATAGGCAGAGGATCATTTGGGGCGGTTTATAGAGGCACAACAGGTGATAGTAAAAGAAGTATCGCCGTCAAGAGATTGGAGAGAATTGTTGATGAAGGGGAGAGGGAATTCCGAACTGAGATTACTGCCATTGCTAGAACACATCATAGAAATTTGGTTAAGCTCATTGGCTTTTGCATCAACGGATCTAGGAAGCTTATTGTTTACGAATACGTCAGCAATGGGTCTCTTGCAAATCTTCTGTTCAATGATGAGAAGCACGTAGCTTGGAGAGAGAGACTAAAAATCGCATTGGACGTTGCCAGAGGAGTCCTATATCTACATGAAGAGTGCGAAGTCCGAATTATTCATTGCAATATAAGTCCTCGGAATATACTTATGGATGAAGCGTGGACTGCAAAGATCTCTGATTTTGGATTGGCAAGGCTTTTAAAGACGGACCATTCGAGAATAAAAAGAGAGAATGACGAGGCAAGCAAGTACTTGGCACCTGAATGGCAGAAGGATGCACAAATATCAGTAAAAATTGACATTTACAGTTATGGGATGGTACTATTGGAGATTGTGTGTCGCAGAAGCACCATAGAAATGAATGTTTCCTCAGCAGAGGAGATACTTCTTTCCAGCTGGGTTTATCAATGCTTTGCAGCAGGGCAGTTAAATAAACTTGTTACAGAAGATGAAGATGTAGATTGGAGGATAATGGAAAGAATGGTGAAGGTGGGGTTGTGGTGTGTGCAAGATGATCCGAATCTTCGTCCTTCAATCAAGAATGTCATCTTGATGTTAGAGGGATTGAAAATTATTCCAATTCCTCCCTCTCCAGCCCACCTCTCTAAAAAGTATTCTTAG 2289 0.4426 MAFIAVVLFMLMLLAKEGTGESMIEVGSLLSAGGNDSSWASSSGHFAFGFYEQGDGYAVGIWLVGAQKTIVWTADRDSLPLSSNSSLNLTTTGLQIFPSPREGQDPIISSSTTVASSASMLDSGNFVLYDENDTVVWQSFHHPTDTILGGDGNLVAYPVNSPATPLDAYWASNTYTSNDQLSLDVSGFLCLSSHPCFNGNISHGKQSHNMSSIYRATLDVDGNLRLYEHQFEGNGSSHVQILWSTSLEKCQINGACGFNSYCSNVTGEAVCECFPSFVPSKSRHEGNASLPLDCVLVHAEDGCQSSEDPTRMYNVTELENMHWGGAIPYSVAPLKKEECQKSFLEDCDCMAVLYSDGNCNKYRLPLAYGRRRTVQDSVTVAFFKVPSGIVTPNNSTQKPGTRVVVDNKTRLIMIIAFTLGFISLLSLVLALFVFFTYKRQVYRYTTLSASEGLGFTEECSLRSFSFDELEKFTGGFTEEIGRGSFGAVYRGTTGDSKRSIAVKRLERIVDEGEREFRTEITAIARTHHRNLVKLIGFCINGSRKLIVYEYVSNGSLANLLFNDEKHVAWRERLKIALDVARGVLYLHEECEVRIIHCNISPRNILMDEAWTAKISDFGLARLLKTDHSRIKRENDEASKYLAPEWQKDAQISVKIDIYSYGMVLLEIVCRRSTIEMNVSSAEEILLSSWVYQCFAAGQLNKLVTEDEDVDWRIMERMVKVGLWCVQDDPNLRPSIKNVILMLEGLKIIPIPPSPAHLSKKYS 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02169 762 PIRSF SRK 159 762 IPR024171 GO:0004674
Cca11g02169 762 PIRSF SRK 1 184 IPR024171 GO:0004674
Cca11g02169 762 Pfam Protein tyrosine and serine/threonine kinase 476 739 IPR001245 GO:0004672|GO:0006468
Cca11g02169 762 SUPERFAMILY Protein kinase-like (PK-like) 458 744 IPR011009 -
Cca11g02169 762 Pfam S-locus glycoprotein domain 198 280 IPR000858 GO:0048544
Cca11g02169 762 ProSiteProfiles Protein kinase domain profile. 474 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02169 762 Gene3D - 21 142 IPR036426 -
Cca11g02169 762 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 151 758 - -
Cca11g02169 762 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 6 150 - -
Cca11g02169 762 SMART blect_4 30 143 IPR001480 -
Cca11g02169 762 Gene3D Phosphorylase Kinase; domain 1 441 550 - -
Cca11g02169 762 Gene3D Transferase(Phosphotransferase) domain 1 551 749 - -
Cca11g02169 762 ProSiteProfiles Bulb-type lectin domain profile. 21 141 IPR001480 -
Cca11g02169 762 Pfam D-mannose binding lectin 69 150 IPR001480 -
Cca11g02169 762 ProSitePatterns Protein kinases ATP-binding region signature. 480 503 IPR017441 GO:0005524
Cca11g02169 762 Gene3D - 143 248 IPR036426 -
Cca11g02169 762 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 176 IPR036426 -
Cca11g02169 762 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 151 758 - -
Cca11g02169 762 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 6 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02169 Cca-Chr11 47544242 47546617 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02169 461 758 Receptor kinase-like Gene Family AT5G38280 37.908 2.79e-61 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Cca11g02169 PK_Tyr_Ser-Thr 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02169 - - cam:101496142 894.804