Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02166 ATGGCCTCCGTAGCCATTTTGTTGTTCATATTAATGTTATTCGCAAAAGAAGGCACAGGTGAAAGCAGCATTAAGGTGGGGTCTTTGCTCTCTGCTGGAGGCAATCACAGTTCATGGGCATCAAGTTCTGGCCATTTTGCTTTTGGGTTTTACCAGCAAGGTGATGGCTATGCTGTTGGAATATGGCTGGTTGGTGCTCAAAACACTATTATCTGGACTGCTAACCGTGACAGCCTCCCACTCTGTTCCAATTCCACCTTGAACCTCACCACAACTGGCCTCTGGCTTTTCCCGAGTCGAAGGGAAGGCCAAGTTCGCATTTCCAGTATAGAAACTGACACAGTAACTTCTTCAGCATCTATGCTTGATTCTGGCAACTTTGTGCTCTATAATGCGAGTCACACTGTTCTCTGGCAAAGCTTTGATTATCCAACTGACACCATATTAGGAGGTCAGAATTTAACTACCTATTCTAAACTGGTTTCTAGTAAGTCCAAATCAGACCATTCCAGTGGACGTTACGTTCTCCGCATGGATTATGTTGATGATCACCTCGTGGCTTACCCTGTCAACAGCCCAGCAACTGCTGGTGCTGCTTACTGGGCTTCAAATGCAAATATTGTCCATAGCCGTCATAAAGTTTCAGGCTTCTTTTGCTTTGCTGTTGACGTCCCCGATTTTTATAGCCGCAGCATGGATGGCTACACTGTCCATATATGTTTTAACAATAGCATTAGTCCCGGAAAGAAATCACACAACATGAGTTCAATCTACCGTGCAACACTTGATGTAGACGGGAACTTGAGATTGTATGAGCACCAATTTGAGGGCAATGGAAGCTCACGTGTCCAAATACTGTGGAGCACCTCGCTTAAGAAATGTCAAATCAAGGGGGTTTGTGGGTTTAACAGTTACTGCTCAAACGTAACAGTAAAAGGCGATGCCGTGTGTGACTGTTTTCCTGGTTTCGTCCCCTACAACAGCAGCGGTAACCTGACTCTGGACTGCACACTGGCCCACACCGAAGATGGTTGCCAAAGCAGTGAAAACCAAAACACAACGAATTTCTATAAGATTGTTCCGTTAGAGGATGTGTATTGGGATGATGATAGTAATAATCCATATCTTGTAAAACAGATGAAGAAGGAAGAGTGCGTGAAGTCTTTCCTGGAAGATTGTGATTGCATGGCAGTGTTATATTCAGACGGCAAGTGCAAAAAATACACACTTCCGCTAACATATGTCATAAGGAATCAAAGTGCATCGACCGTGGCTCTCTTCAAGAGGCCTTCAGGAATTGTCCCAAGTCTATTTCCAAACAACTCCAAACATATGCCTCAGCCTGGGCCTGGGCCTATGGTGATTGTGGATAACAAGAAAAGTCTGATAATGATTCTAGCCTTTGCGTTGGGTTTCATTTCATTGATATCCTTGGTATTAGCGGTGTCCATTTTCTTCACTTATAAGCGAAAAGCTTATAGGTATACAACGTTGTACACAAGTGAGAGTCTGGGATTTACTGATGAATGTTCTTTGCGTTCATTTTCTTTCGATGAACTTGAGAAATCCACTGGAGGCTTCACGGAAGAAATAGGCAGAGGATCGTTTGGTGCGGTTTATAGAGGCACAATTGGTGTCAGTAACAAAAGTATCGCTGTCAAGAGGCTGGAGAGAATTGCTGATGAAGGGGAGAGGGAATTCCGAACTGAAATTACTGCTATTGCTCGAACACATCATAGGAATTTGGTTAAGCTCATTGGTTTCTGCATCAATGGATCCAGGAAGCTTCTTGTTTATGAGTATGTCAGCAATGGGTCTCTTGCAAGTCTTCTCTTGAAAAGTGAGAAGAAACTATCATGGGGAGAGAGACTAAAAATCGCATTGGACGTTGCCAGAGGAGTCTTGTATCTACATGAAGAGTGTGAGGTCCGTATTATCCACTGCAACATAAATCCTCGGAATATACTTATGGATGAAGCGTGGACTGCAAAGATCTCTGATTTTGGATTGGCAAGGCTTTTAAAGACGGACCATTCGATAATGAAAAAAGAGGATGATGGCACAAGCAAGTACTTGGCACCTGAATGGCAGAAGGATGCACCGATATCAGTAAAATTTGACATTTACAGTTTCGGAATGGTACTATTGGAGATCGTGTGCCGCAGACGCAGCATAGAAATGAATGTTTCCTCGGCAGAGGAGATACTTCTTTCCAGCTGGGTATATCAATGCTTTGCAGCAGGGCAGTTAAATAAACTTGTGACAGAAGAAGGTGTAGATTGGATATTATTGGAAAGAATGGTGAAGGTGGGGTTGTGGTGTGTGCAAGACAAGCCGTCTCTTCGCCCTTCAATCAAGAATGTCATCTTAATGTTGCAGGGATTGAAAGATATACCAATTCCTCCCTCTCCAGCTCACCACCCTAAATAA 2430 0.4354 MASVAILLFILMLFAKEGTGESSIKVGSLLSAGGNHSSWASSSGHFAFGFYQQGDGYAVGIWLVGAQNTIIWTANRDSLPLCSNSTLNLTTTGLWLFPSRREGQVRISSIETDTVTSSASMLDSGNFVLYNASHTVLWQSFDYPTDTILGGQNLTTYSKLVSSKSKSDHSSGRYVLRMDYVDDHLVAYPVNSPATAGAAYWASNANIVHSRHKVSGFFCFAVDVPDFYSRSMDGYTVHICFNNSISPGKKSHNMSSIYRATLDVDGNLRLYEHQFEGNGSSRVQILWSTSLKKCQIKGVCGFNSYCSNVTVKGDAVCDCFPGFVPYNSSGNLTLDCTLAHTEDGCQSSENQNTTNFYKIVPLEDVYWDDDSNNPYLVKQMKKEECVKSFLEDCDCMAVLYSDGKCKKYTLPLTYVIRNQSASTVALFKRPSGIVPSLFPNNSKHMPQPGPGPMVIVDNKKSLIMILAFALGFISLISLVLAVSIFFTYKRKAYRYTTLYTSESLGFTDECSLRSFSFDELEKSTGGFTEEIGRGSFGAVYRGTIGVSNKSIAVKRLERIADEGEREFRTEITAIARTHHRNLVKLIGFCINGSRKLLVYEYVSNGSLASLLLKSEKKLSWGERLKIALDVARGVLYLHEECEVRIIHCNINPRNILMDEAWTAKISDFGLARLLKTDHSIMKKEDDGTSKYLAPEWQKDAPISVKFDIYSFGMVLLEIVCRRRSIEMNVSSAEEILLSSWVYQCFAAGQLNKLVTEEGVDWILLERMVKVGLWCVQDKPSLRPSIKNVILMLQGLKDIPIPPSPAHHPK 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02166 809 PIRSF SRK 1 808 IPR024171 GO:0004674
Cca11g02166 809 Gene3D - 145 300 - -
Cca11g02166 809 ProSitePatterns Protein kinases ATP-binding region signature. 531 554 IPR017441 GO:0005524
Cca11g02166 809 Pfam D-mannose binding lectin 69 157 IPR001480 -
Cca11g02166 809 SMART blect_4 30 144 IPR001480 -
Cca11g02166 809 Pfam Protein tyrosine and serine/threonine kinase 527 788 IPR001245 GO:0004672|GO:0006468
Cca11g02166 809 Gene3D Phosphorylase Kinase; domain 1 491 601 - -
Cca11g02166 809 SUPERFAMILY Protein kinase-like (PK-like) 507 792 IPR011009 -
Cca11g02166 809 Pfam S-locus glycoprotein domain 252 326 IPR000858 GO:0048544
Cca11g02166 809 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 6 806 - -
Cca11g02166 809 ProSiteProfiles Bulb-type lectin domain profile. 21 142 IPR001480 -
Cca11g02166 809 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 205 IPR036426 -
Cca11g02166 809 Gene3D Transferase(Phosphotransferase) domain 1 602 800 - -
Cca11g02166 809 Gene3D - 20 142 IPR036426 -
Cca11g02166 809 ProSiteProfiles Protein kinase domain profile. 525 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02166 809 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 6 806 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02166 Cca-Chr11 47514769 47517309 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02166 435 804 Receptor kinase-like Gene Family AT4G18250 35.401 4.88e-62 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Cca11g02166 PK_Tyr_Ser-Thr 3.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02166 - - cam:101496142 868.611