Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02156 ATGCCTTCCCCCTATGTCCCTCCGCAGCACCGCATCCCACCTTTCTCTCACAACTTCGTCCGTGGCGCCGCTAGGCCACGTGGCGGTGGGCGTAACGGTTCCGGCGCCCGGGGGTTCTCCCGGAACAACATGCGACCTGTGGAGGATATGCAAAGCCTCGAGGGAATCAACCTGGAGGCGTACGAGTCCGTCCCGGTGGAGGCGAGTGGGAAGGACGTGCCACCGCCGGTGAAGGCGTTCCATGAAACGGACTTGGACGAGGGTTTGAAGAGGAACATAGAGCGGTGCAAGTACGTGAAACCCACGCCGGTTCAGCGTCACGCGATTCCCATTGCGAGTGCAGGACGTGACCTTATGGCGTGCGCGCAGACTGGGTCGGGTAAAACGGCGGCGTTTTGCTTCCCCATCATTTCGGGGATTTTGAAAGGTCGTTCCGCTTCTGCTTTCTCATCAATGCCTCGCGCTGCCGCTGTTGCTGTTGCATACCCCACTGCACTTATTTTGTCTCCTACCAGAGAGTTGTCTTGCCAGATACGTGATGAAGCCAACAAATTTGCTAATCAGACTGGAGTGAAGGTTGTCGTTGTTTATGGTGGGGCTCCTGTTACTCACCAGTTGCGTCTTCTGGAGAGAGGTGTGGACATATTGGTTGCAACTCCTGGGCGTTTGGTGGATATTATTGAGAGAGAAAGGGTTTCATTAATGAGGATAAAGTATCTTGCTTTGGATGAAGCAGATCGTATGTTGGATATGGGTTTTGAGCATCAAATACGCAAGATTGTGCAGCAAATGCAAATGCCCCCACCGGGTGTTAGACAGACTTTGCTGTTTAGTGCCACGTTCCCTAATGATATACAGAAGCTTGCATCGGACTTTTTATCCAACTACATATTCCTGTCTGTTGGAAGGGTTGGTTCGAGTACCGAACTGATTGTGCAGAAGATTGAGCTTGTTCAGGATATGGATAAAAGGGATCATCTTATTGATCATCTTCGTCGCCATGTTGTCAAGGGAGCCAATGGGAAGCATGCTTTAACTCTTGTATTTGTTGAAACAAAGAAAGGAGCGGATGCTTTAGAAGACTGGCTATCCAGAAGTGGGTTTCCAGCTATTGCGATACATGGTGACAAAGTTCAATTTGAACGGGAACGGGCCTTGAAATCTTTCAAATCTGGTAATACTCCGATTTTAGTTGCGACTGATGTTGCTTCGCGGGGACTGGATATCCCCCATGTGGCACATGTTATAAACTTTGACTTGCCTAGAGACATAGATGACTACGTGCATAGAATTGGAAGAACAGGACGTGCGGGGAAATCTGGTTTAGCCACTGCTTTCTTCAGCGACAAGAATAGCCCTATTGCAAAGGCTCTTGTGGGACTCTTGCAGGAAGCTAAACAAGAAGTTCCGTCTTGGCTCAACCAATATGCTGAGTATACACCATCTGGTGGACGTGGTCGTAGTTTTGGAGCTCACCGTTACACCAGTGGTAGTTATGGTGGTCGTGATTTTCGTAATGCCACCGAACCTGAGGTGCAGAACTACAACTGCTATAGTACCTATGGCAATGCGAATCATGCTATGGAGTTTTACTCTGACACCACGTACACTGATACCTCTTATGACATACAGAACTCCCATAGAGATTCCTCTTTTGACAGTTTGAATGAGGCTTCTGCCCGCCGCAATTATTATCAGACTGGTGTTAACTCAGGTGTTGACTTATATGGTGTTGTGGTGGAAGAAGATGGGCCATGTGGTTATGAATCTATCGTTGCCACTGGTTGGGATTAG 1794 0.4889 MPSPYVPPQHRIPPFSHNFVRGAARPRGGGRNGSGARGFSRNNMRPVEDMQSLEGINLEAYESVPVEASGKDVPPPVKAFHETDLDEGLKRNIERCKYVKPTPVQRHAIPIASAGRDLMACAQTGSGKTAAFCFPIISGILKGRSASAFSSMPRAAAVAVAYPTALILSPTRELSCQIRDEANKFANQTGVKVVVVYGGAPVTHQLRLLERGVDILVATPGRLVDIIERERVSLMRIKYLALDEADRMLDMGFEHQIRKIVQQMQMPPPGVRQTLLFSATFPNDIQKLASDFLSNYIFLSVGRVGSSTELIVQKIELVQDMDKRDHLIDHLRRHVVKGANGKHALTLVFVETKKGADALEDWLSRSGFPAIAIHGDKVQFERERALKSFKSGNTPILVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGKSGLATAFFSDKNSPIAKALVGLLQEAKQEVPSWLNQYAEYTPSGGRGRSFGAHRYTSGSYGGRDFRNATEPEVQNYNCYSTYGNANHAMEFYSDTTYTDTSYDIQNSHRDSSFDSLNEASARRNYYQTGVNSGVDLYGVVVEEDGPCGYESIVATGWD 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02156 597 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 43 518 - -
Cca11g02156 597 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 78 106 IPR014014 GO:0003724
Cca11g02156 597 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 37-LIKE ISOFORM X1 43 518 - -
Cca11g02156 597 SMART ultradead3 97 314 IPR014001 -
Cca11g02156 597 SMART helicmild6 357 438 IPR001650 -
Cca11g02156 597 MobiDBLite consensus disorder prediction 1 45 - -
Cca11g02156 597 Gene3D - 38 300 IPR027417 -
Cca11g02156 597 Pfam Helicase conserved C-terminal domain 330 438 IPR001650 -
Cca11g02156 597 CDD SF2_C_DEAD 311 447 - -
Cca11g02156 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 453 IPR027417 -
Cca11g02156 597 CDD DEADc_DDX3_DDX4 80 305 IPR044763 GO:0003724|GO:0005524
Cca11g02156 597 Pfam DEAD/DEAH box helicase 102 288 IPR011545 GO:0003676|GO:0005524
Cca11g02156 597 Gene3D - 301 480 IPR027417 -
Cca11g02156 597 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 330 477 IPR001650 -
Cca11g02156 597 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 109 299 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02156 Cca-Chr11 47402821 47406045 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02156 78 471 Eukaryotic Initiation Factors Gene Family AT3G13920 33.333 3.33e-58 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02156 K11594 - gmx:100791226 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02156 11 47402821 47406045 Cca11g02156 11 47402821 47406045 ECH