Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02150 ATGGACGAAGATTCGTTGAAGCGCAGCACCGATTGCGTTTATTTTTTGGCCTCTCCACTCACTTGCAAGAAGGGGGCTGAATGTGAGTATCGCCACAATGAGATTGCGAGGCTAAACCCTAGGGATTGCTGGTACTGGCTATCTGGGCAATGCCTTAATCCAACGTGTGCTTTTAGACACCCTCCATTGGATGGTCATACTGGAGTGCCAGTGCCATCTGAACCTACGCCAACTTCATTACCTGCAAACAAGACAATGGTTCCCTGTTATTTTTTCTTCAATGGATTTTGCAATAAAGGTGATAGATGCTCATTTTTGCATGGGCCTGAAGATAGCATTTTTACTGTAAAACCTGTGAAGAATGACAATGGAAGCACTAATGCACTCAACCTAGAAAATAAAACATCATCAGGAAATAGAACAGGTACAGCGTCAATACCTATTGACCAATCTTTAACTGCTCCAAAGAATTTGTCTGATTCTAAGCTTCAGCCTAAGGAAAATCTTCAGCTACAATTACCCAAAAATGTCAAGCAGCAAGGCAATTGCGTAGAGTTATCTGCTTTAGAATATAAAGAAGCTGCTGTGAGTAGGTCAGACTCTCCGTTTCCAGATGATGGCTTTGTTCATAATGTATCTCATTTATGCACTGAGCAGAGTTCAGAGGAGCAAGTAAATAGTCACATAGAGCCTGAGGAGCGGTGGGAATCATCCCCTCATTCCCCTGGATTTGATGTTCTTGTTCATGATGAATTGGAGAACATGGGTTACGAGGAAGACTCTGAATATTTACCAGTGCTTGATAGGGATGAGCAAGAGCTGAATGAGCAGTACTTGGGGTATGAATTTAAAGAGCCAGTTGAGTATGATACTATGTGCCCAGAAGCTGATATTCTGTATGAACAGGAAACATATGATGGTTACAGATGTTTGGATAGGGATCTTACTCATGCTAATGGAAGAGCAGTTCATGCTTATTCCAGAGATATATTCTTAGATTCTTTATTGTCCAGGAAAAGGATTCGGATGTCAGCTGAGATGGCTGCTTATGACCAGAAGTTAGATCTACGTGACCATCTGAGGAGACGTAGAGAAATTAATGGTCCTCCTGTTACAGGTTTCTTAAGGCAAGAATCACCTTCTTTGATGGTTCGAAACCAGGAAAGGCATCAGAGGCATGATATTGAGCAGCGGCCAAGTAGAAGATTGACGTCACAATTGGGATATAATGCCATAGATTCGATTGGAGAGGTTGAAAATCTTTCAATTGCTAACAAGCACAAGTTATTCAGGCCTTCCCAGCAAAATAGACCAAGGAAGCATTATAGAGAAAAACTAACTAAACGGCCGTTTCTTTCATCTAAAATATCCAGGAAACCAGTTTTAAGACAACGGGGATTTATTCACGAGTCCACTACATTTTCAGGACCCAAGACTCTTGCAGAAATTAAAGAAGAGAAGAAGAAGGCTGAAGAAAGTTTACATTGTAAAAGCACATCAACTGATTTCCAGGATCCCAAACCTCTGAGTGAAATTCTCAAGGACAAAAGGACCATGGATCAGTGA 1566 0.4138 MDEDSLKRSTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWLSGQCLNPTCAFRHPPLDGHTGVPVPSEPTPTSLPANKTMVPCYFFFNGFCNKGDRCSFLHGPEDSIFTVKPVKNDNGSTNALNLENKTSSGNRTGTASIPIDQSLTAPKNLSDSKLQPKENLQLQLPKNVKQQGNCVELSALEYKEAAVSRSDSPFPDDGFVHNVSHLCTEQSSEEQVNSHIEPEERWESSPHSPGFDVLVHDELENMGYEEDSEYLPVLDRDEQELNEQYLGYEFKEPVEYDTMCPEADILYEQETYDGYRCLDRDLTHANGRAVHAYSRDIFLDSLLSRKRIRMSAEMAAYDQKLDLRDHLRRRREINGPPVTGFLRQESPSLMVRNQERHQRHDIEQRPSRRLTSQLGYNAIDSIGEVENLSIANKHKLFRPSQQNRPRKHYREKLTKRPFLSSKISRKPVLRQRGFIHESTTFSGPKTLAEIKEEKKKAEESLHCKSTSTDFQDPKPLSEILKDKRTMDQ 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02150 521 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 520 - -
Cca11g02150 521 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Cca11g02150 521 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Cca11g02150 521 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Cca11g02150 521 MobiDBLite consensus disorder prediction 480 498 - -
Cca11g02150 521 Pfam Zinc-finger containing family 7 63 IPR041686 -
Cca11g02150 521 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Cca11g02150 521 MobiDBLite consensus disorder prediction 124 148 - -
Cca11g02150 521 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 1 520 - -
Cca11g02150 521 Gene3D - 78 184 - -
Cca11g02150 521 Gene3D - 2 63 - -
Cca11g02150 521 SUPERFAMILY CCCH zinc finger 83 108 IPR036855 GO:0046872
Cca11g02150 521 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 109 IPR000571 GO:0046872
Cca11g02150 521 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Cca11g02150 521 MobiDBLite consensus disorder prediction 477 521 - -
Cca11g02150 521 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02150 Cca-Chr11 47347258 47350705 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca11g02150 zf-CCCH_3 2.9e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02150 - - gmx:100813826 886.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02150 11 47347258 47350705 Cca11g02150 11 47347258 47350705 ECH