Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02146 ATGAGTTTCTCTGACCATATTCCATCCTTTATGATGTCACCGCCGTCATTTTCAACAGACACAGATGCAATTGAAGTGAGGCTTCAATTCCCAATGAACCACGAAGCAATGGAGCCACATTCACCACAGGATCAACCCCCTTCCTTCAAGAGGGCAAGGACCTGTGATAACAGCCACTCCAATGCAATGCCATACCCTCCAAGAATGGTTCAGCACCCCACAGTTAACAAAGGAACCAGCCACATTTTCTTCAAGACCCGCATTTGTGCAAAGTTCAGACTTGGTGCGTGTAGAAACGGCGAGAATTGCAACTTTGCACATGGGGTTGAGGACATGAGGCAGCCGCCGCCAAATTGGCAAGACCTCGTTGGATTGCGCAACGAAGAACGGCAACAACCACCGCCGAATTGGGATGATGATGAAAAAATCATACATAAGATGAAGCTGTGCAAGAAGTATTACAATGGGGAGGAATGCCCCTATGGTGATAAGTGTAGTTTTCTTCATGAAGACCCTGCCAAGTTCAGGGATGATTCAGGGAGGTTCAGGGAGAGCATAGCTATAAGCATTGGAACTAATGGATCCCCCAAGTCCTATGGTGATGCCTCTAGTGTTTTAGAAAGCAATAGGGCTGTCAACATTGGCTTGAACTCCAATGTTTCCCGGGGGAATGTTAAGTCTACTTATTGGAAGACTAAACTGTGTATCAAGTTTGAGACAACTGGCCACTGCCCCTTTGGTGATGACTGTCACTTTGCTCATGGCCAAGCAGAGTTACATGTTCCCGGCGGTGGACGAAGTGATGCAGAAACTGCAGGTGCCAGTACAATTTCAACCAAACCTATCATTCCGACCATACCAAGAGCTACATCAGTTTCTTCTAATGATGCACCTTCTAGCCACCGAGCAAGTGTTCCTCCAGAAAATGAAGAGGAGCAGGGTAAGAAGCATTTACTCAAGTGGAAAGGACCCAAGAAGATCAATCGAATTTATGGTGATTGGCTTGACGATTTACCCCTTGTTGCCAGCTAG 1032 0.4661 MSFSDHIPSFMMSPPSFSTDTDAIEVRLQFPMNHEAMEPHSPQDQPPSFKRARTCDNSHSNAMPYPPRMVQHPTVNKGTSHIFFKTRICAKFRLGACRNGENCNFAHGVEDMRQPPPNWQDLVGLRNEERQQPPPNWDDDEKIIHKMKLCKKYYNGEECPYGDKCSFLHEDPAKFRDDSGRFRESIAISIGTNGSPKSYGDASSVLESNRAVNIGLNSNVSRGNVKSTYWKTKLCIKFETTGHCPFGDDCHFAHGQAELHVPGGGRSDAETAGASTISTKPIIPTIPRATSVSSNDAPSSHRASVPPENEEEQGKKHLLKWKGPKKINRIYGDWLDDLPLVAS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02146 343 SUPERFAMILY CCCH zinc finger 227 260 IPR036855 GO:0046872
Cca11g02146 343 MobiDBLite consensus disorder prediction 261 319 - -
Cca11g02146 343 Gene3D - 76 114 - -
Cca11g02146 343 Gene3D - 141 173 - -
Cca11g02146 343 Gene3D - 223 261 - -
Cca11g02146 343 PANTHER CCCH ZINC FINGER/TIS11-RELATED 1 337 IPR045877 GO:0003729
Cca11g02146 343 ProSiteProfiles Zinc finger C3H1-type profile. 229 257 IPR000571 GO:0046872
Cca11g02146 343 MobiDBLite consensus disorder prediction 36 69 - -
Cca11g02146 343 SUPERFAMILY CCCH zinc finger 144 171 IPR036855 GO:0046872
Cca11g02146 343 ProSiteProfiles Zinc finger C3H1-type profile. 144 172 IPR000571 GO:0046872
Cca11g02146 343 Pfam CCCH-type zinc finger 148 169 IPR041367 -
Cca11g02146 343 MobiDBLite consensus disorder prediction 271 302 - -
Cca11g02146 343 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Cca11g02146 343 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 108 IPR000571 GO:0046872
Cca11g02146 343 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 230 256 IPR000571 GO:0046872
Cca11g02146 343 SUPERFAMILY CCCH zinc finger 81 114 IPR036855 GO:0046872
Cca11g02146 343 MobiDBLite consensus disorder prediction 47 61 - -
Cca11g02146 343 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 1 337 - -
Cca11g02146 343 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Cca11g02146 343 SMART c3hfinal6 229 256 IPR000571 GO:0046872
Cca11g02146 343 SMART c3hfinal6 144 171 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02146 Cca-Chr11 47309271 47311994 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02146 231 259 C3H Transcription Factor Family AT1G68200 62.069 6.15e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca11g02146 zf-CCCH 9.1e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02146 - - gmx:100793865 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02146 11 47309271 47311994 Cca11g02146 11 47309271 47311994 ECH