Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02139 ATGAGCACCGTTACCGCCACCACACTCTGCAGAGACGAACCTGACTACGACAGCAGCTCCTCCTCCATCACGCTGCCGGAGTCCAGTCGGAGCTGGATGACCAACCTCAGCTTCGGCAGCCGCCGGCGCCGGAGGTCGGTCTCCGTGTGCTCCTCGAGCGCCGAGAGCCCACACGCGAAGCCGCACAAGGCGAACCAGGCTGCATGGGAGGCTATGCGGCGGCTCCGGCGCGACAAGGGGCAGGTGGGGCTGGACCACTTCCGGCTGCTGCGGCGGCTGGGGAGCGGCGACATCGGGAACGTGTACCTTTGCCAGATAAGGAACCCCGTGGTGGGGCTGCCGCAGTGCTTGTATGCGATGAAGGTGGTGGACAGAGAGGCTCTTGCCATTAGGAAGAAGCTCCAGAGAGCGGAGATGGAGAAGGAGATTCTGGCCATGCTTGATCACCCTTTCTTGCCTACTTTGTACACTGAGTTCGATGCCTCTCATTACTCTTGCTTGGTCATGGAGTTCTGCCCCGGTGGTGACTTGTATGCTGCTCGCCAACGCCAGCCAGGGAAGCGCTTTTCCATAACATCTGCTAAGTTCTATGCGGCTGAGACGCTATTGGCATTAGAGTATCTTCACATGATGGGCATAGTGTACAGGGATTTGAAGCCGGAGAATGTGCTTGTGAGGGAAGATGGGCACATTATGCTTTCGGATTTTGACCTTTCGCTGAAATGTGACGTTGTTCCGAAGCTGTTAAGGAGTAAGACTAGATTGGAACGCAGTATCAAGAGTACAAAGAGATCTGTGCCGGCCTGCACAGCCCCCATGCAGCCTGTGCTGTCATGTTTCTTGGCATCAAGCAGGAAAAAGAAAGCGACTGTGACAACAGTTATAAGGGAAAATGTTGAGGTGGAAGAGCATGATCCGGAGCTGGTGGCTGAGCCTATTGATGCCAAGTCCAAGTCATTTGTGGGAACACATGAGTACTTGGCACCAGAAGTGATCTTGGGGCAAGGACATGGGAGTGCAGTGGATTGGTGGACTTTTGGGGTGTTCTTGTATGAGATGTTATATGGGAGAACACCCTTCAAAGGAGAAAATAATGAGAAAACTTTAGTGAACATTTTGAAGCAGCCCTTGGCTTTCCCAAGAATTGCAGTTAGTAGCAGCAAGGAGTTTGAAGAGATGGTGAAAGTTCAAGACCTTATAAGCAAGCTGTTAGTGAAGAATCCCAATAAGAGAATCGGTAGCTGCATGGGTTCTGTTGAGATCAAGAGGCATGAGTTCTTCAAAGGTGTAAATTGGGCCTTAATTAGATCAGTTAGGCCCCCTGAGGTCCCTAGTGATATGAACAAAATTAGGAGTAGGGTTTTGCTACCAAAACTAAGCAAGACAGACAGGGATCAGCCTTATCAGCTTAGAACTCAGCATTTTGAATACTTCTAA 1437 0.5129 MSTVTATTLCRDEPDYDSSSSSITLPESSRSWMTNLSFGSRRRRRSVSVCSSSAESPHAKPHKANQAAWEAMRRLRRDKGQVGLDHFRLLRRLGSGDIGNVYLCQIRNPVVGLPQCLYAMKVVDREALAIRKKLQRAEMEKEILAMLDHPFLPTLYTEFDASHYSCLVMEFCPGGDLYAARQRQPGKRFSITSAKFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSLKCDVVPKLLRSKTRLERSIKSTKRSVPACTAPMQPVLSCFLASSRKKKATVTTVIRENVEVEEHDPELVAEPIDAKSKSFVGTHEYLAPEVILGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLVNILKQPLAFPRIAVSSSKEFEEMVKVQDLISKLLVKNPNKRIGSCMGSVEIKRHEFFKGVNWALIRSVRPPEVPSDMNKIRSRVLLPKLSKTDRDQPYQLRTQHFEYF 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02139 478 ProSiteProfiles Protein kinase domain profile. 87 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02139 478 CDD STKc_phototropin_like 85 444 - -
Cca11g02139 478 Gene3D Phosphorylase Kinase; domain 1 85 171 - -
Cca11g02139 478 Gene3D Transferase(Phosphotransferase) domain 1 172 241 - -
Cca11g02139 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Cca11g02139 478 PANTHER FLIPPASE KINASE 1-RELATED 9 478 - -
Cca11g02139 478 SUPERFAMILY Protein kinase-like (PK-like) 68 449 IPR011009 -
Cca11g02139 478 PANTHER PROTEIN KINASE PINOID 2 9 478 - -
Cca11g02139 478 Gene3D Transferase(Phosphotransferase) domain 1 314 445 - -
Cca11g02139 478 SMART serkin_6 87 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02139 478 MobiDBLite consensus disorder prediction 1 26 - -
Cca11g02139 478 Pfam Protein kinase domain 316 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02139 478 Pfam Protein kinase domain 88 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02139 478 Coils Coil 120 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02139 Cca-Chr11 47240024 47242098 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02139 12 478 AGC Kinase Gene Family AT2G26700 58.476 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Cca11g02139 Pkinase 6.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02139 K08286 - gmx:100777988 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02139 11 47240024 47242098 Cca11g02139 11 47240024 47242098 ECH