Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02128 ATGTTGCTACCTATGTCTGTCTGCGGCCACGAAGACCTCGAACTCTCCAGAGATGGCAGCCACTACAGTCTCTCTACCGGGATATTACCTTCTCTCGGCGCCCGAAGTAACCGCAGAATCAAGCTCAACCCTTTCATTCTCTCTCCCTATGACCGCCGCTACAGGATATGGGAAACTTTCCTTGTTATTTTGGTAGTTTACACTGCTTGGGTTTCTCCCTTTGAATTCGGATTCCTTAAGAAACCAGAAGCACCCCTTTCCATTACGGATAATATTGTCAATGGATTTTTTGCCGTGGATATAGTTCTAACCTTCTTTGTGGCTTACATTGACAAAACCACTTATTTGATCGTGGATGAGCCAAAACAGATTGCTTGGAAATATGCAAGAACTTGGTTGGCCTTTGATGTCATCTCTATTATTCCTTCAGAGCTTGTTCAGAAAATATCACCTTCTCCTCTTCAGTCTTATGGACTATTCAACATGCTTCGCCTTTGGCGTCTTCGAAGAGTTAGCGCTTTGTTTTCTAAGCTTGAGAAGGACAGAAACTATAACTATTTTTGGGTTCGGTGTGCTAAGCTCATTGCAGTTACCCTCTTTGCTGTTCATTGTGCTGCATGTTTCTATTATCTTATTGCTGCACGTTATCATGATCCCAAAAAGACATGGATTGGGGCAACGATGGATAATTTCCTTCAACATAGCTTGTGGTCAAGATATGTGACATCAATTTATTGGTCTATTACTACCTTAACAACGGTTGGTTATGGAGATTTGCATCCAGTGAATTCAAGGGAGATGATCTTTGACATCTTTTACATGCTCTTTAATCTGGGGTTAACTGCATATCTGATTGGTAACATGACCAACTTGGTCGTCCATGGCACAAGTCGTACCAGAAAATTTAGGGATACAATACAAGCTGCATCAAATTTCGCCCATAGGAACCAATTGCCTCCTCGTCTGCAAGACCAAATGCTTGCTCACTTATGTTTGAAGTATAGGACAGACTCAGAAGGGTTGCAGCAGCAAGAGACACTTGATTCTCTTCCTAAAGCCATCAGATCGAGCATTTCACATTATCTTTTCTATTCTCTCGTTGATAAGGTCTACTTGTTTCGTGGGGTTTCAAATGACTTGCTCTTTCAATTGGTGTCAGAGATGAAAGCTGAATATTTTCCACCCAAAGAAGATGTTATCTTGCAAAACGAAGCCCCCACTGATTTTTATATTCTAGTCACTGGTGCCGTGGACCTACTAGTTCTTAAAAATGGGGTTGAACAGGTTGTTGGAGAGGCCAAAACTGGTGATCTCTGTGGTGAGATTGGTGTGCTTTGTTATAAGCCACAGCTTTTCACAGTTCGAACGAAGCGTTTGAGCCAGTTGCTGAGGCTAAACCGTACAGTGTTCTTGAATATTGTTAAGGCCAACTTAGGAGACGGAACCATAATCATGAATAATCTCCTTCAGCATTTGAAAGAGCTCAACGATCCAATCATGGAGGGAGTTTTGGTGGAGATTGAGAACATGATAGCTCGTGGTAGGATGGACCTACCAGTAAGTGTATGCTTTGCGGCAGCAAGAGGAGAAGACTTGTTGCTACAATTGCTGAAGAAGGGCATGGATCCAAATGAATCCGACAACAATCGAAGGACAGCTTTGCATATGGCGGCATCTCAAGGAAAAGAGAACTGTGTTTCGCTTCTGTTAGATTATGGGGCGGATCCCAACATTAGAGATTTGGATGGTAATGTGGCACTGTGGGAGGCTATGGCAGGAGGACATGAGTCAGTGAGCAAGTTGTTAGCAGAAAATGGAGCTAACTTGCAGTACGGGGATGTGGGTCAGTTTGCATGCAGTGCCGCTGAACAAAACAGTCTCAACTTGCTGAAGGAAATAGTGCGGTATGGGGGAGATATCACGCTTCCAAATAGCAACACTGGGACCACAGCTTTGCACGTTGCTGTCTCTGAAGGCAATGTTGAGATTGTCAAGTTCCTTTTGGATCACGGGGCAAGTATCGACAAGCCAGACAAGCATGGTTGGACCCCAAGAAATCTAGCAGATCAGCAGTCACAAAGTGAAATCATTTCCATTTTTCAATCCActggggctggggctggggctggggctggggACCCTTGGCTTCACTCTTCATCACTTCCTATTCCCGATAAGCAGAGTAAGATGAGGTACCTTGGAAGGTTCACAAGTGAGCCAACCATGCCTCTGCCCCTTGATGCCTCGTTTCATGCAACTGATGCCTCTTGGAGCCAAAGCCGTCCAAGGCGTAGGAGCAACAATTACCATAACTCCCTCTTTGGGATAATGTCAGCAGCACACAACGGGGAGAAGGACCTGCTTTTGTCTCTTGACATGAATACCAATGCCAGGAGTGGTCTCAAGAGTCGAGTTGGAGGAACCAGAGTGGTAGTTAGTTGCCCTGAAACGGGTGAGGATGTTGGCAAGCTTGTTTTACTACCTCCAACCTTTCAAGAGCTGCTTCAGATTGGAGCCAACAAATTTGGTATCCGTCCTGCCAAGGTTGTGCTCAAAGATGGATATCAGGTTGAAGATATAGATGTCATTAGAGATGGTGACCATCTTGTTTTTGTAGGTCATAGTGGGGTACTATAA 2637 0.4365 MLLPMSVCGHEDLELSRDGSHYSLSTGILPSLGARSNRRIKLNPFILSPYDRRYRIWETFLVILVVYTAWVSPFEFGFLKKPEAPLSITDNIVNGFFAVDIVLTFFVAYIDKTTYLIVDEPKQIAWKYARTWLAFDVISIIPSELVQKISPSPLQSYGLFNMLRLWRLRRVSALFSKLEKDRNYNYFWVRCAKLIAVTLFAVHCAACFYYLIAARYHDPKKTWIGATMDNFLQHSLWSRYVTSIYWSITTLTTVGYGDLHPVNSREMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASNFAHRNQLPPRLQDQMLAHLCLKYRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGDLCGEIGVLCYKPQLFTVRTKRLSQLLRLNRTVFLNIVKANLGDGTIIMNNLLQHLKELNDPIMEGVLVEIENMIARGRMDLPVSVCFAAARGEDLLLQLLKKGMDPNESDNNRRTALHMAASQGKENCVSLLLDYGADPNIRDLDGNVALWEAMAGGHESVSKLLAENGANLQYGDVGQFACSAAEQNSLNLLKEIVRYGGDITLPNSNTGTTALHVAVSEGNVEIVKFLLDHGASIDKPDKHGWTPRNLADQQSQSEIISIFQSTGAGAGAGAGDPWLHSSSLPIPDKQSKMRYLGRFTSEPTMPLPLDASFHATDASWSQSRPRRRSNNYHNSLFGIMSAAHNGEKDLLLSLDMNTNARSGLKSRVGGTRVVVSCPETGEDVGKLVLLPPTFQELLQIGANKFGIRPAKVVLKDGYQVEDIDVIRDGDHLVFVGHSGVL 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02128 878 Gene3D Jelly Rolls 336 496 IPR014710 -
Cca11g02128 878 Pfam KHA, dimerisation domain of potassium ion channel 809 871 IPR021789 -
Cca11g02128 878 ProSiteProfiles KHA domain profile. 809 878 IPR021789 -
Cca11g02128 878 CDD CAP_ED 372 477 IPR000595 -
Cca11g02128 878 Pfam Ankyrin repeats (3 copies) 524 610 IPR002110 GO:0005515
Cca11g02128 878 Pfam Ankyrin repeats (3 copies) 621 700 IPR002110 GO:0005515
Cca11g02128 878 ProSiteProfiles Ankyrin repeat region circular profile. 549 580 - -
Cca11g02128 878 SMART cnmp_10 372 489 IPR000595 -
Cca11g02128 878 ProSiteProfiles Ankyrin repeat profile. 647 679 IPR002110 GO:0005515
Cca11g02128 878 PANTHER POTASSIUM CHANNEL AKT1 11 875 IPR045319 GO:0005249|GO:0006813
Cca11g02128 878 SUPERFAMILY Voltage-gated potassium channels 49 293 - -
Cca11g02128 878 ProSiteProfiles Ankyrin repeat profile. 549 581 IPR002110 GO:0005515
Cca11g02128 878 Pfam Cyclic nucleotide-binding domain 392 476 IPR000595 -
Cca11g02128 878 Pfam Ion transport protein 55 299 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca11g02128 878 Gene3D - 520 702 IPR036770 -
Cca11g02128 878 PANTHER K+ TRANSPORTER 1-RELATED 11 875 - -
Cca11g02128 878 ProSiteProfiles Ankyrin repeat region circular profile. 647 679 - -
Cca11g02128 878 SUPERFAMILY cAMP-binding domain-like 297 492 IPR018490 -
Cca11g02128 878 PRINTS EAG/ELK/ERG potassium channel family signature 67 74 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca11g02128 878 PRINTS EAG/ELK/ERG potassium channel family signature 90 100 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca11g02128 878 PRINTS EAG/ELK/ERG potassium channel family signature 101 110 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca11g02128 878 PRINTS EAG/ELK/ERG potassium channel family signature 240 257 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca11g02128 878 PRINTS EAG/ELK/ERG potassium channel family signature 266 277 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca11g02128 878 PRINTS EAG/ELK/ERG potassium channel family signature 284 293 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca11g02128 878 Gene3D - 56 293 - -
Cca11g02128 878 ProSiteProfiles cAMP/cGMP binding motif profile. 372 474 IPR000595 -
Cca11g02128 878 SMART ANK_2a 647 676 IPR002110 GO:0005515
Cca11g02128 878 SMART ANK_2a 549 578 IPR002110 GO:0005515
Cca11g02128 878 SMART ANK_2a 582 611 IPR002110 GO:0005515
Cca11g02128 878 SMART ANK_2a 613 642 IPR002110 GO:0005515
Cca11g02128 878 ProSiteProfiles Ankyrin repeat profile. 582 614 IPR002110 GO:0005515
Cca11g02128 878 SUPERFAMILY Ankyrin repeat 527 705 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02128 Cca-Chr11 47048106 47055260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02128 15 871 Ion Channels AT2G25600 62.284 0.0 1083
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02128 K21867 - gmx:100819491 1531.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02128 11 47048106 47055260 Cca11g02128 11 47048106 47055260 ECH