Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02124 ATGGAGAAGAAAAAGGTAGCAGTTCCCCTCGTGTGCCACGGCCACTCTCGCCCCGTCGTTGATCTCTTCTACAGTCCTGTTACGCCCGATGGCTTTTTCCTCATCAGTGCAAGCAAGGATTCCAGTCCTATGCTCAGAAATGGAGAAACTGGTGACTGGATTGGAACATTTGAAGGGCACAAAGGGGCTGTGTGGAGTTGCTGCTTGGATACTAATGCCTTACGTGCTGCAACTGCTTCTGCTGATTTCTCAACGAAAGTTTGGGATGCTTTAACAGGAGATGAATTGCACTCTTTTGAGCATAAGCACATTGTTCGAGCATGTGCTTTTTCTGAGGATACTCACCTTTTGCTCACTGGGGGAGTTGAGAAAATTCTCCGAATCTATGATATGAATCGGCCTGATGCACCACCCAGAGAAGTGGATAAATCCCCTGGTTCTGTCAGAACTGTTGCCTGGCTTCATAGTGACCAGACAATATTGAGTTCGTGTACTGATATGGGAGGTGTCAGGTTATGGGATGTGAGAAGTGGTAAAATAGTCCAGACACTTGAAACTAAGTCATCTGTGACAAGTGCTGAAGTGAGTCAGGATGGACGTTATATTACAACTGCTGATGGTTCTACTGTAAAGTTTTGGGATGCTAATTACTATGGATTGGTGAAGAGCTATGATATGCCCTGCACCGTGGAATCAGTTTCATTGGAGCCTAAATATGGGAACAAGTTCGTAGCTGGTGGAGAAGATATGTGGGTTCATGTTTTTGATTTTCATACAGGCAATGAGATTGCATGCAACAAGGGGCACCATGGTCCTGTCCACTGTGTTCGTTTTTCTCCTGGTGGAGAATCCTATGCCTCAGGATCTGAGGATGGAACCATCCGAATATGGCAGACTGGCCCATTGACTCTCGATGACTCGGAGGCTTTGTCTGCAAATGGATCAATTGAAAAGGTGAAGGTGACTGCAGACGAGGTTTCACGCAAGATTGAGGGTTTTCATATAACAGATGAAGGGAAATCTAAAGAAAAGGATGAGGCTGTGGAGGAGTCAAGCTAA 1059 0.457 MEKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAATASADFSTKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGVEKILRIYDMNRPDAPPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRLWDVRSGKIVQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANYYGLVKSYDMPCTVESVSLEPKYGNKFVAGGEDMWVHVFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTLDDSEALSANGSIEKVKVTADEVSRKIEGFHITDEGKSKEKDEAVEESS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02124 352 Gene3D - 9 328 IPR015943 GO:0005515
Cca11g02124 352 PANTHER OS02G0205400 PROTEIN 1 345 - -
Cca11g02124 352 Pfam WD domain, G-beta repeat 94 130 IPR001680 GO:0005515
Cca11g02124 352 Pfam WD domain, G-beta repeat 265 297 IPR001680 GO:0005515
Cca11g02124 352 Pfam WD domain, G-beta repeat 179 214 IPR001680 GO:0005515
Cca11g02124 352 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Cca11g02124 352 SMART WD40_4 134 174 IPR001680 GO:0005515
Cca11g02124 352 SMART WD40_4 259 298 IPR001680 GO:0005515
Cca11g02124 352 SMART WD40_4 5 47 IPR001680 GO:0005515
Cca11g02124 352 SMART WD40_4 217 256 IPR001680 GO:0005515
Cca11g02124 352 SMART WD40_4 92 130 IPR001680 GO:0005515
Cca11g02124 352 SMART WD40_4 177 214 IPR001680 GO:0005515
Cca11g02124 352 SMART WD40_4 50 89 IPR001680 GO:0005515
Cca11g02124 352 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 298 - -
Cca11g02124 352 SUPERFAMILY WD40 repeat-like 5 302 IPR036322 GO:0005515
Cca11g02124 352 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 298 IPR001680 GO:0005515
Cca11g02124 352 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Cca11g02124 352 CDD WD40 14 298 - -
Cca11g02124 352 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02124 Cca-Chr11 47016856 47023049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02124 9 296 Eukaryotic Initiation Factors Gene Family AT2G46290 28.528 1.02e-39 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02124 K13137 - gmx:100818422 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02124 11 47016856 47023049 Cca11g02124 11 47016856 47023049 ECH