Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02121 ATGAAGGATCCAATGGAGGATCAAGTGAAATGTAGGAGGGCACTGCAGAGACCCAAAGAGCTTAGAAGAAGAAGCCAATACAAACAAGAGAAGTTACAAGAAACAAGACCTGACTCACCACAACTGGTTTCTTCTGCTTCATGCAAAAGTCTTGTGTTTCCTGCCAGGCCTGGCTATGGCCAGCTGGGGGCAAAGTGTCTGGTGAAAGCTAATCACTTCCTTGCAGATATATCAGCATCTGACTTGAGCCATTACAATGTTAAAATAACACCTGAAGTTACTTCTCGTAAAACAAGCAAAGCTATCATAGCTGAGTTGGTGAGGGTTCACAGGAACACTGACTTGGGGATGAGGCTTCCTGTTTATGATGGAGGTAGAAATCTCTACACTGCTGGCTTGCTTCCGTTTGCATACAAAGAGTTTACCATACTATTGAGCCAGGATGATGAGGGTACTGGTACTACCAGGGAAAGAGAATTTGAAGTAGTAATCAAGTTTGCAGCTCGTGTTAGCATGCATCAATTACGTGAGCTTCTCAGTGGGAAACAAGTGGACACTCCACAAGAGGCTCTTACTGTCATTGACATTGTATTGAGGGAGCTTGCGGCTCAGAGCTACGTGTCGATTGGGAGATATCTCTATTCTCCAGATTTAAGAAAACCAAAGCAGCTAGGTGGTGGCCTTGAATCATGGCGTGGGTTCTACCAAAGTATAAGGCCAACTCAGATGGGATTGTCACTAAATATTGACATGTCATCAATGGCGTTTATTGAACCACTCCCTGTAATTGATTTTGTTGCTCAAATTTTGGGAAAAGACGTGCTCTCAAAGCCATTTTCAGATGCAGATCGTGTCAAGATTAAGAAAGCCTTAAGAGGTGTGAAAGTTGAAGTTACACATAGAGGAAGTTTTCGAAGAAAGTACAGGATTACAGGATTGACATCACAGCCTACAAGGGAGCTTAATTTCCCTGTGGATGAGAAAATGAACATGAAATCAGTAGTTGATTACTTTCAAGAAATGTATGGATATACAATCATATATTCTCATCTACCCTGCCTTCAAGTAGGAAGCCTAAAAAAGGTGAACTATTTGCCTATGGAGGCATGCAAGATAGTTGGGGGTCAGAGATATACAAAAGGGCTTAACGAAAAGCAGATAACTTCTCTGCTAAAGGTCTCCTGCCAGAGACCACGTGAACAAGAGACAGATATTCTGCAGACAATTCAACAAAATGATTATGAGTATAATCCCTATGCAAAGGAGTTTGGTATCAGCATTGACAGCAAGCTTGCAACAGTTGAGGCGCGGGTTCTTCCTCCTCCATGGTTGAAATATCACGAAACTGGAAGGGAGAAAGAATATTTGCCACAAGTTGGTCAATGGAACATGATGAACAAGAAAGTTATAAATGGAAGCACTGTAAAATATTGGGCATGTATCAATTTCTCACGAAGTATCCAAGAAAGTATTGTTCGCGGGTTTTGCCAACAGTTAGTTCAAATGTGCCAAATCTCAGGCATGGAATTTAGTCAGGACCCTGTGATTCCTATATATTCAGCAAGACCTGATCAGGTAAAGAAGGCCTTGAAGTATGTACATTCAGCTGTACTAGATAAACTTGGTGGGAAAGAACTGGAGTTGCTGATTGCCATTCTTCCAGACAACAATGGCTCTCTGTATGGTGATCTCAAAAGAATCTGCGAAACAGATCTGGGGTTGATTTCTCAGTGCTGTCTTTCAAAACACGTATTCAAGATTAATAGACAGTATTTGGCAAATGTGGCACTGAAGATCAATGTCAAGATGGGAGGAAGGAACACAGTGCTTTTGGATGCTCTTAGTTGGAGGATCCCATTGGTTAGTGACATTCCAACAATAATTTTTGGAGCTGATGTAACTCATCCAGAATCTGGAGAGGACCCTTGTCCTTCCATTGCGGCTGTTGTAGCTTCTCAGGACTGGCCGGAAGTAACAACGTATGCAGGATTGGTATGTGCTCAGCCTCATCGTGAGGAACTCATTCAAGATCTTTTTAAATGTTGGAAGGATCCTCATCATGGTATAGTTTATGGTGGCATGATCAGAGAGCTGTTACTCTCTTTTAAGAAGGCAACTGGACAAAAACCATTGAGGATAATATTTTACAGGGATGGGGTAAGTGAAGGACAGTTCTACCAGGTTTTGTTGTATGAGCTTGATGCCATCCGTAAGGCTTGTGCATCTTTGGAACCTAGTTACCAACCTCCGGTAACATTTGTTGTGGTTCAAAAGCGGCATCACACTAGACTCTTCTCAAACAATCATGATGACAGAAACAGCACTGATAAGAGTGGAAATATCTTACCCGGTACCGTGGTGGATTCTAAAATCTGTCATCCTACGGAATTTGACTTCTATTTATGCAGTCATGCGGGAATTCAGGGTACAAGTAGACCAGCCCATTATCATGTTCTGTGGGACGAAAACAATTTCACTGCAGATGAGATTCAATCTCTGACCAACAACTTGTGCTACACCTATGCTAGATGTACACGGTCTGTTTCTGTAGTGCCTCCTGCGTACTATGCTCATTTGGCTGCTTACAGAGCTCGATTCTACATGGAACCTGATGTTCTTGAGATAGCAAAATCTCGAGGTGCAAGACCAAAAGATGAGTCAGTTCGGCCACTACCAGCTCTGAAAGAGAAGGTGAAGAATGTAATGTTTTACTGTTGA 2718 0.4227 MKDPMEDQVKCRRALQRPKELRRRSQYKQEKLQETRPDSPQLVSSASCKSLVFPARPGYGQLGAKCLVKANHFLADISASDLSHYNVKITPEVTSRKTSKAIIAELVRVHRNTDLGMRLPVYDGGRNLYTAGLLPFAYKEFTILLSQDDEGTGTTREREFEVVIKFAARVSMHQLRELLSGKQVDTPQEALTVIDIVLRELAAQSYVSIGRYLYSPDLRKPKQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVLSKPFSDADRVKIKKALRGVKVEVTHRGSFRRKYRITGLTSQPTRELNFPVDEKMNMKSVVDYFQEMYGYTIIYSHLPCLQVGSLKKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQETDILQTIQQNDYEYNPYAKEFGISIDSKLATVEARVLPPPWLKYHETGREKEYLPQVGQWNMMNKKVINGSTVKYWACINFSRSIQESIVRGFCQQLVQMCQISGMEFSQDPVIPIYSARPDQVKKALKYVHSAVLDKLGGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLSKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDPCPSIAAVVASQDWPEVTTYAGLVCAQPHREELIQDLFKCWKDPHHGIVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFSNNHDDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVLEIAKSRGARPKDESVRPLPALKEKVKNVMFYC 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02121 905 MobiDBLite consensus disorder prediction 1 35 - -
Cca11g02121 905 ProSiteProfiles Piwi domain profile. 548 869 IPR003165 GO:0003676
Cca11g02121 905 Pfam Piwi domain 549 868 IPR003165 GO:0003676
Cca11g02121 905 Pfam Argonaute linker 2 domain 402 446 IPR032472 -
Cca11g02121 905 SUPERFAMILY PAZ domain 255 414 IPR036085 GO:0005515
Cca11g02121 905 MobiDBLite consensus disorder prediction 1 42 - -
Cca11g02121 905 Pfam N-terminal domain of argonaute 65 198 IPR032474 -
Cca11g02121 905 Gene3D - 438 611 - -
Cca11g02121 905 ProSiteProfiles PAZ domain profile. 260 374 IPR003100 GO:0005515
Cca11g02121 905 Gene3D paz domain 254 378 - -
Cca11g02121 905 CDD Piwi_ago-like 418 868 IPR045246 -
Cca11g02121 905 CDD PAZ_argonaute_like 259 373 - -
Cca11g02121 905 PANTHER PROTEIN ARGONAUTE 10 21 904 - -
Cca11g02121 905 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 21 904 - -
Cca11g02121 905 SUPERFAMILY Ribonuclease H-like 537 870 IPR012337 -
Cca11g02121 905 Pfam PAZ domain 265 390 IPR003100 GO:0005515
Cca11g02121 905 Pfam Argonaute linker 1 domain 208 257 IPR014811 -
Cca11g02121 905 SMART PAZ_2_a_3 264 396 IPR003100 GO:0005515
Cca11g02121 905 SMART DUF1785_2 207 259 IPR014811 -
Cca11g02121 905 SMART Piwi_a_2 548 869 IPR003165 GO:0003676
Cca11g02121 905 Pfam Mid domain of argonaute 457 534 IPR032473 -
Cca11g02121 905 Gene3D - 617 905 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02121 Cca-Chr11 46965905 46973209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02121 49 905 Eukaryotic Initiation Factors Gene Family AT5G43810 74.104 0.0 1388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02121 K11593 - gmx:100808457 1688.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02121 11 46965905 46973209 Cca11g02121 11 46965905 46973209 ECH
Cca11g02121 11 46965905 46973209 Cca03g00741 03 15331710 15340548 PCT