Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02120 ATGACGATCGACGACGATAGCTCCATTTATGTGGGAGGTCTCCCCTACGACGCCACCGAAGAAACCATTCGCACTGTCTTTAATTTGTATGGTGCCATCCTCGATGTTAAGATTATCAACGACCAACGCACTAGGGGCAAGTGCTATTGCTTTGTTACTTTCACAAACCCTAGGTCAGCAATCGATGCCATCAACGACATGAACGGCAGAACCATTGATGGGCGTGTGGTTAAGGTTAATGGGGTGAGGGCTCGTGGGGGCAGGTCAAATTTTGGCAGAGAGCGTTATCATTATCATAATGATGAGAGAAGTGGAGATTGGGACCGCGGAAGAGATCGAGATTATGATCATGATAATAATGATAGGGATGGGTATAGGAATCGGGGCAGTGATTGGACTCGAGACCGTGATAGGTCTCGAGACCGGGATCAGGACAGGGATAGGAGATTTGAGCATATGCATGATTATGATCAACCTAGAGAACCTATTTTAGATAATGATTGGAGTCGAGAGGATGATAGAGTTGAACATGAACACGAACACAGCCGGGGGCGTGATGATGATGTGGATAGAGACCACAATTTAGATATGGATACAGGCCGAAAAATGGATAGGACCAGTGATCTTGATAGAAGTTTCGATGAGGATACAAAAGATCAGTCGAGGAGAATGAATGATTTGAATGCTACAAATGAAAATAGTATGGATCTTTCATCTGATTCAGCTGGGACTCCCAATGATCAGGTAGAAGCTCAATTAGAGAGGTCAACCCAACAGCTTGATCAACTGAAAAAGGAGGTTTCTCAGATGGAAGAGGGATTGGAGAAGAAAAGACTCCATGTTAAAGAATTACAAAAGCAATCTAAGAAACTGGAGGATGCACTGATCAATGCAAAGAAAAACTCTTCGTATCGTCAGATGCAGTTGATAAAGCTGCATAAATGTTTTCGGCAAGTGAAAGATTACACAGAGCGACTTAAAACTAGTGAAAAAGAACTTCAGGTCCAGTGA 1011 0.4332 MTIDDDSSIYVGGLPYDATEETIRTVFNLYGAILDVKIINDQRTRGKCYCFVTFTNPRSAIDAINDMNGRTIDGRVVKVNGVRARGGRSNFGRERYHYHNDERSGDWDRGRDRDYDHDNNDRDGYRNRGSDWTRDRDRSRDRDQDRDRRFEHMHDYDQPREPILDNDWSREDDRVEHEHEHSRGRDDDVDRDHNLDMDTGRKMDRTSDLDRSFDEDTKDQSRRMNDLNATNENSMDLSSDSAGTPNDQVEAQLERSTQQLDQLKKEVSQMEEGLEKKRLHVKELQKQSKKLEDALINAKKNSSYRQMQLIKLHKCFRQVKDYTERLKTSEKELQVQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02120 336 SMART rrm1_1 8 80 IPR000504 GO:0003723
Cca11g02120 336 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 334 - -
Cca11g02120 336 SUPERFAMILY RNA-binding domain, RBD 4 113 IPR035979 GO:0003676
Cca11g02120 336 MobiDBLite consensus disorder prediction 107 248 - -
Cca11g02120 336 CDD RRM_SF 9 80 - -
Cca11g02120 336 Coils Coil 246 301 - -
Cca11g02120 336 MobiDBLite consensus disorder prediction 107 225 - -
Cca11g02120 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Cca11g02120 336 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Cca11g02120 336 MobiDBLite consensus disorder prediction 226 248 - -
Cca11g02120 336 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 334 - -
Cca11g02120 336 Gene3D - 2 98 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02120 Cca-Chr11 46936456 46944900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02120 3 79 Eukaryotic Initiation Factors Gene Family AT2G36660 33.766 2.37e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02120 - - gmx:100816804 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02120 11 46936456 46944900 Cca11g02120 11 46936456 46944900 ECH