Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02119 ATGGCATCACCCTCCGAACTAAGCCTTGATTGCAAGCCCCAAAGCTATTCCTTGCTACTCAAATCATTTGGAGACCAAACTGATCAGACCTACAAGCTTGAAGAATTCCTCTCTCGCTTAGAGGAAGAACGTCTCAAGATCGATGCCTTCAAACGCGAGCTTCCTCTCTGCATGCAACTTCTCACCAACGCCGTGGAGGCTTCAAGGCAGCAACTTCAGGCCTTTAAAGTGAACCATGGCACGAAGCCAATTCTGGAAGAATTCATTCCCATGAAGCACTTAGCCTCAGAAAGCTCTGAGAAGGCCACAAACATGTCCGACAAGGCAAATTGGATGACATCTGCACAACTTTGGAGCCAAGCAAGCGAAGGAACCAAACAACAACCCTCAATCACATCGCCAAAAGAAGCTGATATAGGCTTCAGCATCAGTCCCAAGCTTGGTCTAGACCACAAACAGAGGAACGGTGGAGGAGCCTTTCTCCCATTCTCGAAAGAGAGAAACTCATGCCATGGCTCCACATTGCGGCCTCTCCCTGAACTGGCTCTTGCCTCTGCGGAGAAGGAAGTGGAGGAGAAGAAACGTGCAGAGGTGGAAAGGGGAGTTTCTTCGTGTCAGAATAATAAGAAGGAGAATTCAGGAAGTGATGGAGCTGTGGTTGATCAAGGAAAAGGAGGTAGTCCAGTTGCATCATcacatgcacaacaaacaaccacaaccacaacacaaACTCATAGGAAAGCTAGAAGGTGTTGGTCACCAGACCTGCACCGTCGATTCGTTAATGCTCTTCAAATGCTTGGTGGATCACAAGTGGCGACCCCGAAGCAGATAAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGAAATATAGGCTTCACACAAGAAGACCAAGTCCAAGTCAAACGGGTCCAGCAGCACCGCAGCTAGTGGTCCTAGGCGGAATCTGGGTCCCACCGGAATATGCCACGGCGGCAGCGCATTCAGCCGCCCCCACTCTCTACGGCGCGCACCCTTCCTCCCACGCGCCCCCGCCGCACTACTGCGCTGCCACTCCAGTGCCGCAGGAGTTCTACAcggcggcaccgccgcagccgctgcttccgccgcccccgccgcACCACAACGCGCTGCACCACCTGCACATGTACAAGGCCGCGCCCCATGGGCACGGCTCGCTGGAATCCGACGTTCCCGGCGGCGGAGAGCGGTCGGAGAGCATCGAGGACGGGAAGTCGGAGAGCAGCAGCTGGAAGGGGGAGAGTGGGGAGAACGACGGGGAGAGAAAGCGGATTGGTGAGGAGAGCAATGGGAGTGATATCACTCTCAAATTCTAG 1362 0.4993 MASPSELSLDCKPQSYSLLLKSFGDQTDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAVEASRQQLQAFKVNHGTKPILEEFIPMKHLASESSEKATNMSDKANWMTSAQLWSQASEGTKQQPSITSPKEADIGFSISPKLGLDHKQRNGGGAFLPFSKERNSCHGSTLRPLPELALASAEKEVEEKKRAEVERGVSSCQNNKKENSGSDGAVVDQGKGGSPVASSHAQQTTTTTTQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSQTGPAAPQLVVLGGIWVPPEYATAAAHSAAPTLYGAHPSSHAPPPHYCAATPVPQEFYTAAPPQPLLPPPPPHHNALHHLHMYKAAPHGHGSLESDVPGGGERSESIEDGKSESSSWKGESGENDGERKRIGEESNGSDITLKF 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02119 453 Coils Coil 33 53 - -
Cca11g02119 453 MobiDBLite consensus disorder prediction 194 250 - -
Cca11g02119 453 MobiDBLite consensus disorder prediction 119 137 - -
Cca11g02119 453 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 244 304 IPR017930 -
Cca11g02119 453 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 247 302 IPR006447 GO:0003677
Cca11g02119 453 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 453 IPR044787 GO:0003700|GO:0006355
Cca11g02119 453 Pfam Myb-like DNA-binding domain 249 300 IPR001005 -
Cca11g02119 453 MobiDBLite consensus disorder prediction 396 453 - -
Cca11g02119 453 MobiDBLite consensus disorder prediction 119 138 - -
Cca11g02119 453 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 453 - -
Cca11g02119 453 MobiDBLite consensus disorder prediction 228 247 - -
Cca11g02119 453 SUPERFAMILY Homeodomain-like 244 305 IPR009057 -
Cca11g02119 453 Gene3D - 246 304 - -
Cca11g02119 453 MobiDBLite consensus disorder prediction 201 215 - -
Cca11g02119 453 MobiDBLite consensus disorder prediction 410 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02119 Cca-Chr11 46927765 46930752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02119 1 453 G2-like Transcription Factor Family AT2G03500 49.587 1.58e-128 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca11g02119 Myb_DNA-binding 9.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02119 - - gmx:100807925 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02119 11 46927765 46930752 Cca11g02119 11 46927765 46930752 ECH