Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02117 ATGGCGCTGCTCCTTCTGGTGTTCCTCCTGCAGCTGAGTTCCCATCTCCGAGTTAACTCGGAGCCCACTCAGGACAAGCAAGCCCTCCTTGCTTTCCTCTCCAAAACCCCACACTCCAACCGCCTTCAATGGAACGCCTCAGCCTCCGCCTGCGACTGGGTCGGCGTCAAATGCGACGCCTCACGCGCCTTCGTCTACTCGCTCCGTTTACCCGCCGTCGGCCTCGTGGGTCGGGTCCCACCCGACACGATCGGCCGCTTAAGCCAGCTTCGGATCCTTAGTCTCCGCTCCAACGGCCTCACCGGCGAGATCCCCGCCGATTTCTCAAACCTAACGTTCCTCCGCAGTCTCTACCTACAAAACAACGACCTCtccggcgagttcccaccgagtctcactcgcttaactcgcttggctcgcttggatctctcctccaacaacttctccggccccatccctttctccgtcaacaacttaacccacctcaccggtctttttctcgaaaacaacaccttctccggcataatcccaagcatcACGGCCAAGCTCGTTGACTTCGACGTTTCATATAACCGCCTCAACGGCTCCATTCCCCAGACGCTCTCCAATTTCCCCCAATCCTCATTCGCCGGAAACCTAGCTCTCTGCGGGCCGCCGTTGAAGCCCTGCAACCCCTTCTTCCCTGCTCCGGCGCCGTCTCCGTCCGCCAATTCCAACCCGCCGCCGCTCCACAAGAAGTCCAAGAAGCTCTCCACCGGCGCCATTGTCGCAATCGTTGTCGGGTCTGTTTTGGCGGTGGCGTTGTTGCTGCTGCTGCTGTTACTCTGCCTCCGGCGGAGGCGGAGGCAGCCGGCGAAGCCGCCGAAGGAGGCTACTGCGGCGGCGCGTGCCGTGCCAGCGGAGGCGGGGACGTCGTCGTCGAAGGAGGATATTACGGGGGGCTCGGCGGAGGCGGAGAGGAACAAGCTTGTGTTTTTCGAAGGGGGGATATACAGTTTCGATTTGGAGGATTTGTTGAGGGCTTCGGCGGAGGTGTTGGGGAAAGGGAGTGTTGGGACCTCGTACAAGGCGGTGCTGGAGGAGGGGACGACGGTGGTGGTGAAGAGGCTTAAGGATGTTGTGGTGACGAAGAAAGAGTTCGAGATGCAAATGGAGGCTTTGGGGAAGATTAAGCACGAGAATGTGGTTCCTCTCAGAGCGTTTTACTTCTCCAAGGACGAGAAATTGCTCGTTTACGATTACATGTCTGCGGGTAGCTTGTCTGCGCTGCTACACGGGAGCAGAGGGTCTGGGAGAACACCACTAGATTGGGAGAGCCGGATGAGAATAGCAGTAGGAGCAGCAAGAGGGCTGGCATGCCTCCACGTGTCAGGGAAGGTGGTCCACGGGAACATTAAATCTTCCAACATCCTCCTCCGAGGGCCGGAGCAGGAGGCCGGCGTTTCAGACTTTGGCCTCAACCCCTTGTTCGGGAACGGAGCCCCATCCAACCGGGTGGCGGGTTACCGGGCACCCGAAGTGGTGGAAACCCGAAAGGTGAGCTTCAAGTCTGACGTGTACAGCTTCGGCGTGTTGGTGTTGGAGCTTCTGACGGGGAAAGCGCCGAACCAAGCCTCTCTGGGGGAAGAAGGAATCGACCTTCCCAGGTGGGTCCAGTCTGTGGTGCGCGAAGAGTGGACTGCTGAGGTGTTCGATGCGGAGCTCATGAGGTTCCACAACATAGAGGAGGAGATGGTTCAGCTGTTGCAGATCGCCATGGCTTGTGTTTCGGTGGTGCCCGATCAGAGGCCCACCATGCCGGACGTGGTCCGCATGATTGAGGACATCAACCGGGGAGAGACCGACGACGGCTTGCGCCAGTCCTCCGATGATCCTTCCAAAGGATCAGAGGGTCACACGCCTCCCCCGGAGTCAAGGACTCCACCTAGATCTCAAACACCTTAA 1944 0.5422 MALLLLVFLLQLSSHLRVNSEPTQDKQALLAFLSKTPHSNRLQWNASASACDWVGVKCDASRAFVYSLRLPAVGLVGRVPPDTIGRLSQLRILSLRSNGLTGEIPADFSNLTFLRSLYLQNNDLSGEFPPSLTRLTRLARLDLSSNNFSGPIPFSVNNLTHLTGLFLENNTFSGIIPSITAKLVDFDVSYNRLNGSIPQTLSNFPQSSFAGNLALCGPPLKPCNPFFPAPAPSPSANSNPPPLHKKSKKLSTGAIVAIVVGSVLAVALLLLLLLLCLRRRRRQPAKPPKEATAAARAVPAEAGTSSSKEDITGGSAEAERNKLVFFEGGIYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFEMQMEALGKIKHENVVPLRAFYFSKDEKLLVYDYMSAGSLSALLHGSRGSGRTPLDWESRMRIAVGAARGLACLHVSGKVVHGNIKSSNILLRGPEQEAGVSDFGLNPLFGNGAPSNRVAGYRAPEVVETRKVSFKSDVYSFGVLVLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMACVSVVPDQRPTMPDVVRMIEDINRGETDDGLRQSSDDPSKGSEGHTPPPESRTPPRSQTP 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02117 647 Gene3D Phosphorylase Kinase; domain 1 307 414 - -
Cca11g02117 647 MobiDBLite consensus disorder prediction 285 313 - -
Cca11g02117 647 PANTHER OS05G0480400 PROTEIN 12 627 - -
Cca11g02117 647 Pfam Leucine rich repeat N-terminal domain 23 59 IPR013210 -
Cca11g02117 647 Gene3D Ribonuclease Inhibitor 22 180 IPR032675 -
Cca11g02117 647 Pfam Leucine rich repeat 76 124 IPR001611 GO:0005515
Cca11g02117 647 Gene3D Ribonuclease Inhibitor 181 226 IPR032675 -
Cca11g02117 647 Gene3D Transferase(Phosphotransferase) domain 1 415 627 - -
Cca11g02117 647 CDD STKc_IRAK 346 609 - -
Cca11g02117 647 SUPERFAMILY Protein kinase-like (PK-like) 344 609 IPR011009 -
Cca11g02117 647 MobiDBLite consensus disorder prediction 608 647 - -
Cca11g02117 647 SUPERFAMILY L domain-like 24 220 - -
Cca11g02117 647 PANTHER OS05G0588300 PROTEIN 12 627 - -
Cca11g02117 647 MobiDBLite consensus disorder prediction 608 626 - -
Cca11g02117 647 ProSiteProfiles Protein kinase domain profile. 340 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02117 647 Pfam Protein kinase domain 343 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02117 Cca-Chr11 46897421 46900276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02117 25 627 Receptor kinase-like Gene Family AT5G58300 54.248 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca11g02117 Pkinase 5.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02117 - - gmx:100806857 964.526
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02117 11 46897421 46900276 Cca11g02117 11 46897421 46900276 ECH