Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02115 ATGACTCCCCCAACCTGGGAAGCTGATAAAATGTTAGATGTGTATATTTATGATTATCTTGTGAAGAGACAATTACATGCTTCTGCTAGAATATTTCAAGCTGAAGGAAATGTTTCAACGGATCCTGTTGTTATAGACGCACCAGGTGGTTTTCTCTTTGAGTGGTGGTCTGTCTTCTGGGACATGTATATTGCCAGGGTAACCCAGAAGCACTCAGAAGCAACAGCATCTCTCATCAAGAATCAGCAAATTAAGGCTCGAGCAATTCAGAGGCAACAAGAGCAAGAGCTTCAGAATGCAAGCCAGAATCAACATATGCAAATGCAACTCTTATTTCAAAGACATGCTCAGCAGCAGCAACATCGTCTGGGTGGACCTATTAGCAATGATCCTTTGATGAGGCAGGATCGGGGTAATTCTAATGCTGTGGCAACAAAAACATATGAGGACAGGTTGAAGCTCCCACTTCAGAGAGACACTTTAGATGATGCAAGCATTAAGCAAAAAGCAGCTGATGATGTTGGTCAGCTTTTAAATCCGAACCATGCCTTATTGTTTAAAGCAGCAGGAACAACTGGTGAACAGGCTACAGGACAGACATCACTCAGTGCACCAATCATTGTACCGGGAAATATTCAACATGTTCAAAATCTAAACCAGAAACATCCAGGGTCTACACAAGACATAAAGAGTGATATGATCAATGCAATGATGAGGTCTCAAGCTGTTGATTCAGAAGGATCCTTTATGGGTTGTCATGGTTCAAATCAAGGTGGTAGCAATTTGACTTTGAAAGGATGGCCCCTAGCAGGAATGGATCAGCTTCGCTCAGGATTTCTCCAGCCAAATAGTTTGATTGAGTCTCCACAATCTTTCAATCAACTTTCTCTACGGCAGCAACTTATGCTTCAAGCACAACAAAATTTGATTTCTCCTTCTGTCAATGATTTTGAGAGCAGAAGACTCAGGATGCTTTTTAATAATCAAAACATGGGTATTGGGAAAGATGGCCAATCAAATTCTTTAGGTGATTTAATGCCAAATGATGGATCATCTGCACAAGTTTATTCCTCAGTGTTGCCCCATCAAGACTCGGATATGCTCCTTAAGCAACAAATTCAAAAGAGTAGCCAGCAGCTTCAACAATATTCACAGCACCCTCTTTCAGGCCAGCAGTCTGAGAGTCTCCTGCAAGAAAAAATTGGTCATGGAAGCATGACAATAGAGGGCAATGTGTCCAATACCTTACAAGGAAACGATCAGGCTTCCAAAAGTAAAACAGTGCGAAAGCGAAAATCAGCATCATCTTCAGGTCCTGCCAATAGCTCTGGAACTGCAAACACAACAGGACCACCTGCCAGCTCACCTTCTACACCATCTACACAAACACCTGGGGAAATGATGACAGTGTCAACTCTGCAAAATAATGTTCCTTCCTCTAAGTCATCATTTATGTTTGGCACTGATAGTTTGGGCACACAGAATCAATTGGCTGATATGGATCACCTTGTGGGTGATGGATGTTTGGGTGACAGTGTTGATTCATTCTTATCTGCTGATGATACAGGTGTTGGCAAAGAATTCTCATTCAAGGAAATCAAGCATATAATGGCAAGTTCACACAAAGTTGAGTGTTGTCACTTCTCATCGGATGGAAAACTTCTTGCTACCGGTGGCCATGATAAAAAGGCTTCTTTGTGGTGCACAGAACAGTTTAACCTGAAATCTACACTTGAAGAGCACAGTGAATGCATAACTGATGTTCGATTTTGTCCAAGCATGTTGCGTGTTGCTACATCCTCAGCAGATAAAACTGTTAGGGTTTGGGATGTTGAAAATCCTAGTTTTTCTCTTCGAACATTCACAGGTCATGCAACAACTGTGATGTCACTAGATTTTCATCCAAGCAAAGAGGACCTTATTTGCTCTTGTGACAATAGTGAGATAAGATACTGGAGTATTAATAATGGTAGTTGTACTGGGGTTTTCAAGGGTGGTGCAACTCAGACGAGATTTCAACCTTCTTTGGGAAGGCTTCTTGCAGCTGCAGCAGATAATCTCGTTTCCATTTTTGATGTTGAAACCCTGGGTTGCAGGCTTAAGTTACAGGGCCATAATAATGTTATCCGTTCTATGTGCTGGGATTTGTCGGGCAAACATTTGGCTTCTCTTAGTGATGATCTGGTTAGAGTATGGAACGTTGGATCTGGAGGCAAAGGAGAATGCATGCACGAGTTGAATGCATCAGGGAACAAATTCAGCACCTGTGTTTTCCATCCCTTCTATCCTTTGCTGGTCATTGGCTGCAATGAGACTCTTGAGCTGTGGGACTTCGGTGAGAACAAAACATTGACTCTACATGCACACGACAAGGTTGTATCTTCCTTGGCAGTATCAAATGTTACTGGATTTCTGGCTTCAACTAGTCATGACAAGTATTTCAAGATCTGGAAGTGA 2457 0.4204 MTPPTWEADKMLDVYIYDYLVKRQLHASARIFQAEGNVSTDPVVIDAPGGFLFEWWSVFWDMYIARVTQKHSEATASLIKNQQIKARAIQRQQEQELQNASQNQHMQMQLLFQRHAQQQQHRLGGPISNDPLMRQDRGNSNAVATKTYEDRLKLPLQRDTLDDASIKQKAADDVGQLLNPNHALLFKAAGTTGEQATGQTSLSAPIIVPGNIQHVQNLNQKHPGSTQDIKSDMINAMMRSQAVDSEGSFMGCHGSNQGGSNLTLKGWPLAGMDQLRSGFLQPNSLIESPQSFNQLSLRQQLMLQAQQNLISPSVNDFESRRLRMLFNNQNMGIGKDGQSNSLGDLMPNDGSSAQVYSSVLPHQDSDMLLKQQIQKSSQQLQQYSQHPLSGQQSESLLQEKIGHGSMTIEGNVSNTLQGNDQASKSKTVRKRKSASSSGPANSSGTANTTGPPASSPSTPSTQTPGEMMTVSTLQNNVPSSKSSFMFGTDSLGTQNQLADMDHLVGDGCLGDSVDSFLSADDTGVGKEFSFKEIKHIMASSHKVECCHFSSDGKLLATGGHDKKASLWCTEQFNLKSTLEEHSECITDVRFCPSMLRVATSSADKTVRVWDVENPSFSLRTFTGHATTVMSLDFHPSKEDLICSCDNSEIRYWSINNGSCTGVFKGGATQTRFQPSLGRLLAAAADNLVSIFDVETLGCRLKLQGHNNVIRSMCWDLSGKHLASLSDDLVRVWNVGSGGKGECMHELNASGNKFSTCVFHPFYPLLVIGCNETLELWDFGENKTLTLHAHDKVVSSLAVSNVTGFLASTSHDKYFKIWK 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02115 818 Gene3D - 668 818 IPR015943 GO:0005515
Cca11g02115 818 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 4 818 IPR044716 GO:0003714
Cca11g02115 818 MobiDBLite consensus disorder prediction 408 423 - -
Cca11g02115 818 Pfam WD domain, G-beta repeat 618 653 IPR001680 GO:0005515
Cca11g02115 818 Pfam WD domain, G-beta repeat 698 733 IPR001680 GO:0005515
Cca11g02115 818 Pfam WD domain, G-beta repeat 539 567 IPR001680 GO:0005515
Cca11g02115 818 Pfam WD domain, G-beta repeat 782 818 IPR001680 GO:0005515
Cca11g02115 818 Pfam WD domain, G-beta repeat 574 610 IPR001680 GO:0005515
Cca11g02115 818 SUPERFAMILY WD40 repeat-like 528 818 IPR036322 GO:0005515
Cca11g02115 818 ProSiteProfiles Trp-Asp (WD) repeats profile. 786 818 IPR001680 GO:0005515
Cca11g02115 818 Pfam LisH 10 36 IPR006594 GO:0005515
Cca11g02115 818 ProSitePatterns Trp-Asp (WD) repeats signature. 597 611 IPR019775 -
Cca11g02115 818 ProSiteProfiles Trp-Asp (WD) repeats profile. 578 619 IPR001680 GO:0005515
Cca11g02115 818 SMART WD40_4 571 610 IPR001680 GO:0005515
Cca11g02115 818 SMART WD40_4 779 818 IPR001680 GO:0005515
Cca11g02115 818 SMART WD40_4 656 692 IPR001680 GO:0005515
Cca11g02115 818 SMART WD40_4 529 568 IPR001680 GO:0005515
Cca11g02115 818 SMART WD40_4 739 777 IPR001680 GO:0005515
Cca11g02115 818 SMART WD40_4 614 653 IPR001680 GO:0005515
Cca11g02115 818 SMART WD40_4 695 733 IPR001680 GO:0005515
Cca11g02115 818 Gene3D - 516 667 IPR015943 GO:0005515
Cca11g02115 818 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 786 818 - -
Cca11g02115 818 PANTHER LISH-SSDP-WD40 4 818 - -
Cca11g02115 818 CDD WD40 532 818 - -
Cca11g02115 818 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 621 658 - -
Cca11g02115 818 MobiDBLite consensus disorder prediction 408 466 - -
Cca11g02115 818 ProSiteProfiles Trp-Asp (WD) repeats profile. 536 567 IPR001680 GO:0005515
Cca11g02115 818 MobiDBLite consensus disorder prediction 333 355 - -
Cca11g02115 818 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Cca11g02115 818 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 578 613 - -
Cca11g02115 818 ProSiteProfiles Trp-Asp (WD) repeats profile. 621 662 IPR001680 GO:0005515
Cca11g02115 818 MobiDBLite consensus disorder prediction 432 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02115 Cca-Chr11 46835191 46845642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02115 532 778 Miscellaneous Gene Families AT5G08390 27.344 2.24e-20 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Cca11g02115 WD40 0.053 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02115 - - gmx:100801265 1258.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02115 11 46835191 46845642 Cca11g02115 11 46835191 46845642 ECH