Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02113 ATGTGGAACTCCGCCGAGAACGCGTTCGCCAGATCGGAGTCCTTCAGGGAGGAAGGGGAAGACGAGGAGGCGCTGCGCTGGGCGGCGCTGGAGAGGCTCCCGACGTACAAACGAGCGCGCCGGGGAATCTTCAAGAACCTCATTGGCGACATGAAGGAGATCGACGTCAGAGACCTCCAGGCGCAGGAGCAGCGCCTTCTTCTTGAGAGGCTCATTGACTGCGCTGACAACGATCCTGAGAGCTTCTTCAGTCGCATGAGAAGCCGATTTGACGCAGTAGGTTTGGAGTTTCCGAAGATTGAAGTTCGATTTCAGAACTTGACCGTTGAGACCTATGTGCATGTTGGTAGCAGAGCTCTGCCTACCATTCCCAATTTCATTTGCAATATGACTGAGGCTCTTTTAAGACAGTTGCGGATATTAAGAAGGAAGAGAAGCAAATTGACGATTCTATCAGACATCGGTGGGATTATTAGACCTTCAAGGCTAACGTTGCTACTGGGTCCGCCAAGCTCTGGGAAAACAACACTACTATTAGCTCTTGCTGGTAGGCTAGGACCCGGGTTGAAGatgtcagggaacattacatacaatggacatactctgaaagagtttgttcctcagagaactgctgcttatgtcagccaacaagattggcatgtggccgagatgaccgtgagggaaacactacagtttgctggtcgctgtcaaggcgttggatttaaatttgatatgttgctggaactggccagaagagaaaaaaatgccggaataaaacctgatgaagaccttgatctattcatgaagTCATTAGCTCTCGGGGGACAGGAAACAAATCTTGTGGTGGAGTACATCATGAAGatattaggtttggacatatgtagtgacacactggtgggagatgaaatgctcaaaggcatctcgggggggcaaaagaagcggcttacaacaggtgaattattaattggtccagcaagagtgttgttcatggatgagatatcaactggtcttgatagttcaactacttatcaaattatcagacatcttaagcattcaacccgtgaacttgatgggactacaattgtttctcttcttcagccagctccagagacctatgaattgtttgatgatgttattcttttgtgcgagggtcagattgtatatcaggggcctcgtgaagctgctgttgattttttcaaacaactgggattcagttgtcctgagcgaaaaaatgtagcagatttcttgcaagaaGTTACGTCTAAGAAGGACCAAGAGCAGTACTGGTCCGTTGTCGGTCGCCCTTACAGATACGTACCTGTTGGGAAGTTTGCCGAAGCATTTTCCTTGTATCGTGAGGGAAGGATTTTGTCAGATGAACTAAATACACCTTTCGATAGACGTTATAACCATCCGGCGGCATTGGCAACTCTTTGCTATGGCGCGAAAAGGCTCGAACTTCTCAAGACTAATTTCCAGTGGCAGAAGCTTCTTATGAAACGGAATTCATTTATTTATGTTTTTAAATTTGTTCAGctgtttatagttgccttaattacaatgagtgttttcttccgaacaacgatgcaccgtaattcaattgacgatggaggcttatatcttggagcactgtacttttctatggttattattcttttcaatggttttaccgaggtgtcaatgttagttgcaaagcttccagttctttacaagcacagagatttgcacttctatcctagctgggcatatacactcccttcctggttccttagtatcccaacttccctgatagaggctggatgctgggtggcggtttcatactatgcaagtggatatgatcctgcaatttctagattttttcggcagttcttgctttttttctttctgcaccagatgtctataggtctgtttcgtttgataggatccttgggccggaatatgattgtagccaataccttcggatcctttgccatgttggttgtaatggctcttggcggatatataatttcaagagatcgtatacctgtttggtggatatggggtttttggatttctcctttgatgtatgcacaaaattcagcttctgtgaacgagttcctgggacattcttggaataagAAAGCTGGAAACCAGACGACGCATTCATTGGGTTTGGCAGTATTAAAAGAGCGGAGTTTGTATGCAGAAAGCTATTGGTATTGGATTGGTCTTGGGGCAATGGTTGGATACACAATTTTGTTCAACATTCTATTTACAATCTTCTTGGCTTACCTTAATCCCTTGGGAAGACAACAAGCTGTAGTTTCAAAGGATGAGCTGCAAGAAAGAGAAAAGAGAAGAAAAGGCGAAAGTGTTATTATTGAGTTGAGAGAGTATTTGCAGCGTTCGGCATCAAGTGGAAAGCATTTTaagcaaagaggaatggttctcccttttcaaccactttccatggctttcagcaatatcaattactacgtggatgtccctttggaattgaaacaacaagggatattagaggacaggttacggctgcttgttaatgttaccggagcctttaagcctggtgtgctgacagcattggttggagtaagtggtgctggaaaaacgacgctgatggatgtgttagctggaagaaaaactggtggagtcatagaagggagtgtttatatatctggttatcccaaaagacaggacacttttgcaagaatttctggttactgtgagcagactgatgttcattccccttgtttgactgtttgggaatccttactgttctctgcttggcttcgattgtcttcagatgttgacttcgagacacaaaaggcctttgttgaggagataatggagcttgtggagctcactccgttaagtggagcactagtaggtctacctggaattgatggtctgtcaactgaacaacgaaaaaggttgactatagcagtggaactggttgccaacccttctatagtcttcatggatgagcccacttctggattggatgcccgggccgcagctattgtgatgagaactgtgaggaatatagtaaatactgggcggacaattgtgtgcacgatccatcaacctagcatagacatttttgaatcctttgatgagcttctgtttatgaaaaggggaggagagctcatttatgctggtccacttggtcctaaatctagtgaactaatcagttattttgaggcaatcgaaggagttcaaaagatcagatatggatataaccctgctacgtggatgctggaggttacttcttcagctgaagaaagccgactgggagtggacttcgctgaaatctaccgaaaatcaagtttatatcagtatgtatattttttggtggtaaattttgtactcgatttatttggtatatatgaacatacgatgtttttcttcagatataaccaagagttggttgaaaggttgagcaagccaattagtaattcaaaagaattgcattttcctaccaagtattgtcggtcatcttttgagcagttcctaacttgtctgtggaagcaaaatctttgttactggcgtaatcctcagtacactgctgttcgctttttttacactgtaatcatctcattgatgcttgggaccatatgctggagatttggtgctaaaagGGAGACGCAGcaagatctattcaatgccatgggatccatgtattcggcaatcctcttcattggtataacaaatggcacagctgttcagcctgttgtttccgtggaaagatttgtttcttatagagaaagagctgcagggatgtattcggctttatcatttgcatttgctcaggttgtgattgagttcccttatgtgttcgcacaggctatgatatactctacaatattctattccatggcttccttcgtctggactgttgataggttcatttggtacttattcttcatgtatttcacgatgctatattttaccttctatggaatgatgacaacggctgtcacaccaaatcacaatgtcgctgcgatcattgctgctccattttatatgttgtggaaccttttcAGTGGTTTTATGATTCCTCACAAGagaatccctgtctggtggagatggtattactgggcaaaccctgtggcctggagtctGGTTTCTGTTAGATATAAGTCAGATTATAGTCGTTTGTTTAATGACAGATTTTGGTGA 4176 0.142 MWNSAENAFARSESFREEGEDEEALRWAALERLPTYKRARRGIFKNLIGDMKEIDVRDLQAQEQRLLLERLIDCADNDPESFFSRMRSRFDAVGLEFPKIEVRFQNLTVETYVHVGSRALPTIPNFICNMTEALLRQLRILRRKRSKLTILSDIGGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGPGLKMSGNITYNGHTLKEFVPQRTAAYVSQQDWHVAEMTVRETLQFAGRCQGVGFKFDMLLELARREKNAGIKPDEDLDLFMKSLALGGQETNLVVEYIMKILGLDICSDTLVGDEMLKGISGGQKKRLTTGELLIGPARVLFMDEISTGLDSSTTYQIIRHLKHSTRELDGTTIVSLLQPAPETYELFDDVILLCEGQIVYQGPREAAVDFFKQLGFSCPERKNVADFLQEVTSKKDQEQYWSVVGRPYRYVPVGKFAEAFSLYREGRILSDELNTPFDRRYNHPAALATLCYGAKRLELLKTNFQWQKLLMKRNSFIYVFKFVQLFIVALITMSVFFRTTMHRNSIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTLPSWFLSIPTSLIEAGCWVAVSYYASGYDPAISRFFRQFLLFFFLHQMSIGLFRLIGSLGRNMIVANTFGSFAMLVVMALGGYIISRDRIPVWWIWGFWISPLMYAQNSASVNEFLGHSWNKKAGNQTTHSLGLAVLKERSLYAESYWYWIGLGAMVGYTILFNILFTIFLAYLNPLGRQQAVVSKDELQEREKRRKGESVIIELREYLQRSASSGKHFKQRGMVLPFQPLSMAFSNINYYVDVPLELKQQGILEDRLRLLVNVTGAFKPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGSVYISGYPKRQDTFARISGYCEQTDVHSPCLTVWESLLFSAWLRLSSDVDFETQKAFVEEIMELVELTPLSGALVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPKSSELISYFEAIEGVQKIRYGYNPATWMLEVTSSAEESRLGVDFAEIYRKSSLYQYVYFLVVNFVLDLFGIYEHTMFFFRYNQELVERLSKPISNSKELHFPTKYCRSSFEQFLTCLWKQNLCYWRNPQYTAVRFFYTVIISLMLGTICWRFGAKRETQQDLFNAMGSMYSAILFIGITNGTAVQPVVSVERFVSYRERAAGMYSALSFAFAQVVIEFPYVFAQAMIYSTIFYSMASFVWTVDRFIWYLFFMYFTMLYFTFYGMMTTAVTPNHNVAAIIAAPFYMLWNLFSGFMIPHKRIPVWWRWYYWANPVAWSLVSVRYKSDYSRLFNDRFW 1391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02113 1391 Pfam ABC-2 type transporter 488 699 IPR013525 GO:0016020|GO:0140359
Cca11g02113 1391 Pfam ABC-2 type transporter 1167 1378 IPR013525 GO:0016020|GO:0140359
Cca11g02113 1391 Pfam Plant PDR ABC transporter associated 704 768 IPR013581 -
Cca11g02113 1391 PANTHER ATP-BINDING CASSETTE TRANSPORTER 9 1117 - -
Cca11g02113 1391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 831 1053 IPR027417 -
Cca11g02113 1391 CDD ABCG_PDR_domain2 814 1052 IPR034003 -
Cca11g02113 1391 SMART AAA_5 160 393 IPR003593 -
Cca11g02113 1391 SMART AAA_5 854 1046 IPR003593 -
Cca11g02113 1391 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 135 408 IPR003439 GO:0005524
Cca11g02113 1391 PANTHER ABC TRANSPORTER G FAMILY MEMBER 32 9 1117 - -
Cca11g02113 1391 PANTHER ABC TRANSPORTER G FAMILY MEMBER 32 1122 1382 - -
Cca11g02113 1391 Pfam ABC-transporter N-terminal 76 126 IPR029481 -
Cca11g02113 1391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 408 IPR027417 -
Cca11g02113 1391 Gene3D - 830 1060 IPR027417 -
Cca11g02113 1391 PANTHER ATP-BINDING CASSETTE TRANSPORTER 1122 1382 - -
Cca11g02113 1391 Pfam ABC transporter 846 997 IPR003439 GO:0005524
Cca11g02113 1391 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 817 1070 IPR003439 GO:0005524
Cca11g02113 1391 Gene3D - 136 432 IPR027417 -
Cca11g02113 1391 Pfam ABC-2 type transporter 366 419 IPR043926 GO:0140359
Cca11g02113 1391 Pfam ABC transporter 154 333 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02113 Cca-Chr11 46780776 46795467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02113 853 1029 Calmodulin-binding Proteins AT2G36910 26.519 8.05e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02113 K08711 - gmx:100785375 2518.04