Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02105 ATGTCATCAAGTGGAACCCTTTGGAGCTATGAGGAAGAAAAAGCCTTTGAGAATGCCATCGCCATGCATTGGATTGAGGAGGCCTCAAAAGAGCAATGGGAGAAAATTGCTTCAGCAGTTCCCAGCAAAAGCATGGAAGAAGTCAAGCAACATTACCAGATTCTAGTAGAGGATGTAAGTGCAATAGAGGCAGGTCATATATCGTTCCCTAACTATGCTTCTGAGGAAACCACATCTTCAAATAAGGACTTCCATGGCTCTTCCAAGGCCACAAATTCAGATAAAAGATCAAATTGTAGTTTTGGAAGTGGCTTTTCTGGTTTAGGACACGACTCCACCACACATAGTGGTAAAGGAGGCTTGTCAAGGTCATCAGAACAAGAAAGGAGAAAGGGAATTCCATGGACTGAAGAGGAGCACAGGTTATTTTTACTTGGTCTAGACAAGTTTGGAAAAGGAGATTGGAGAAGCATTTCAAGGAACTTTGTGATTTCTAGGACTCCCACTCAAGTTGCAAGTCATGCACAAAAGTACTTCATAAGGTTGAATTCTATGAATAGAGACAGGAGGAGGTCTAGTATCCATGATATCACTAGTGTGAACAATGGAGATGTGGCAAACAATCAAGCACCAATTACAGGGCAGCATAGTAGCACAATTTCTCCAAGTACAATGGGTGTAGGACAATCGATGAAGCATAGAGTTCAGGGTCACATACCAGCTGGTTTAGGCATGTATGGAACACCAGTAGGGCATCCTGTGGCAGCTCCTCCAGGGCATATGGCATCTGCAGTTGGCACTCCTGTCATGCTTCCTCCTGGACCCCACcctcatccccatgctcatcctcatcctcatcctcatccACCTTATGTTCTTCCTCTTGCTTATCCAATGGCACCTCCAACAATGCACCAATAA 921 0.4224 MSSSGTLWSYEEEKAFENAIAMHWIEEASKEQWEKIASAVPSKSMEEVKQHYQILVEDVSAIEAGHISFPNYASEETTSSNKDFHGSSKATNSDKRSNCSFGSGFSGLGHDSTTHSGKGGLSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVANNQAPITGQHSSTISPSTMGVGQSMKHRVQGHIPAGLGMYGTPVGHPVAAPPGHMASAVGTPVMLPPGPHPHPHAHPHPHPHPPYVLPLAYPMAPPTMHQ 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02105 306 ProSiteProfiles SANT domain profile. 1 52 IPR017884 -
Cca11g02105 306 SUPERFAMILY Homeodomain-like 129 184 IPR009057 -
Cca11g02105 306 PANTHER TRANSCRIPTION FACTOR KUA1 1 305 - -
Cca11g02105 306 SMART sant 131 181 IPR001005 -
Cca11g02105 306 SMART sant 4 58 IPR001005 -
Cca11g02105 306 CDD SANT 8 53 IPR001005 -
Cca11g02105 306 Gene3D - 133 185 - -
Cca11g02105 306 CDD SANT 134 179 IPR001005 -
Cca11g02105 306 ProSiteProfiles Myb-like domain profile. 127 179 IPR001005 -
Cca11g02105 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 183 IPR017930 -
Cca11g02105 306 Pfam Myb-like DNA-binding domain 134 179 IPR001005 -
Cca11g02105 306 Pfam Myb-like DNA-binding domain 8 53 IPR001005 -
Cca11g02105 306 PANTHER TRANSCRIPTION FACTOR MYBS1 1 305 - -
Cca11g02105 306 ProSiteProfiles SANT domain profile. 135 183 IPR017884 -
Cca11g02105 306 SUPERFAMILY Homeodomain-like 8 62 IPR009057 -
Cca11g02105 306 MobiDBLite consensus disorder prediction 73 121 - -
Cca11g02105 306 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 131 181 IPR006447 GO:0003677
Cca11g02105 306 MobiDBLite consensus disorder prediction 73 133 - -
Cca11g02105 306 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Cca11g02105 306 Gene3D - 1 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02105 Cca-Chr11 46641077 46642772 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca11g02105 Myb_DNA-binding 5.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02105 - - vun:114176836 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02105 11 46641077 46642772 Cca11g02105 11 46641077 46642772 ECH