Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02104 ATGTTCCATGGTGTTGTGGCTCGAGGAAGGTTTTCATTACCTGCGCCATCTGCTCCACGTAATCGAAATTGGGCACCATGCCATGCCGTTGTTGCAACGCCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAGAGCTTAGATGTTCGTGGATTTGCAGCAGTTGATCTAAAGATAGTGTTTCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAGGATGTGTAAGGCTCTAATGCCAGGGGATGAAGAAAACATGAGTGATGAGGCAATATGGGAAACTCTTCCTCACTTTTGGGTTGCAATCTCTATGGTGTTCTTCATTGCTGCTACTGTCTTCACACTCCTGAAACTGAGTGGTGATGTAGGTGCTCTGGGCTGGTGGGACTTGTTTATTAACTTTGCTATTGCTGAGTGCTTTGCTTTCCTTGTATGTACAAAGTGGTCCAATCCAGTCATTCATAGAAATTCAAGAGAAGCCAGTAGTTCATCTTCTACTACGATTAGATATCTTGACTGGAACAGTGGTTTAGTGGTTTCTACAGAGGAAAATCAAGGGAGGATGTGTAGCCTGCAAGACATAGGAGGTCATTTCATGAAAGTGCCAATTATTGCATTCCAGGTTCTTCTTTGTATGCATCTAGAGGGAACACCTGCTTGTGCTATATATATACCTCTTCCAGTTCTTTTTTCCCCCCTTTTCCTACTGCAAGGAGCTGGTGTACTGTTATCTGCATCTAAATTAGGGGAGAAACTTGTGCTTCTTCTACGAAGTGGAGCTGGTGGAGGAATATATTTTAGATTTTCTTCAAGATTTCATGATTGCTTGGGGTTCTTGCATCATGGTTCTAGATTATTAGGTTGGTGGTCAATTGATGAAGGGAGTCGGGAAGAACAAGCACGACTATACCATGAGGGAGCATCTGGGTATAATACGTTCTGTGGTTATCCTCCAGAGATTGTTAAGAAAATGCCAAAAAAGGAACTTGCTGAGGAGGTTTGGAGACTCCAGGCAGCTCTTGGTGAACAGACTGAAATTACAAAGTACAGCCAACAGGAGTATGAAAGACTTCAAAATGAGAAAGTGCTATGCAGAATCTGTTTTGAGGGAGAGATTAACGTTGTATTGCTCCCATGTAGGCATCGTGTCCTTTGCAGCACTTGCTCTGAGAAGTGTAAGAAGTGCCCAATTTGCCGCGACTCTATTGCTGAGCGTCTGCCAGTATACGATACCAATTTGGTTCTCTTTTGTTGCCGATCCAGATGGGTTCGCGCTTGGAACTGTGTTTTGGTTCCTAACTCCTGTATTCAGGCTTCTGAGTTCTTTGTAAAGAAACGGTTGCCAAAGAGATGGATTGTTTCCTTATGTGCTATAAGATTTGATCTTGAACAAGGCCAGCTTGTAGAAGTATGTTATCCACCTGGCTGTCTTACTCATGATGAAGAGCTGGAGGTTGCTTATAGTTCGTTTCCGGATTCGGTTTCCCAGCAACAAAACCGCTCCAGCATTCATGATTGTATTTTCTTTTTCCGGTTTCGTAGGCACCTCAAGTCTCCATCCAGCAATGCCACTCGTTCTTCCGAGATAACTGAGGTTGACAAGGAGTTTTCTCCAAAGCCCATAGAAGAAAACAGTGTTAGTAAAAGATTATCCAGTAAGAGTAGTGTTAATGTTTCTAAATACCTGTATGGCTTTGTCTTTAACAGACAGAGACATGATGAGAGGCTAAAGCGAGGAGGGGAGCAGAAGTCTGTGGTCATCTTGTCCCACAGTCCTTATTCTAGTGTGTTTAGACCTTTGTTACAAATTGTAGGCCCCTTATATTTTGACATTGGTAAGATAGCACTAGAGCATATTGCTGCATATGTTTCAACATGGCCTGATCCTATTCCCGGTAAGCAAATGGATCTTCCTATTGGGAATGCGACGCTTAAAGTGAACTTGCCGCCTGCGCACAGCTTGCACATGGAAAATGGAGTATCTTTTGATGAATCTGCTTCTCCTGTAGCTCCTTTTCTTCCGAATAATCAGTCTGTCCCACAGGGCCTTTTTCATGATTCGGATCTTTTTGGTGCTTTCCGAGGCCTTTTATTGCAGCTTTGGTTGTTATGGGAGTTGTTACTCATTGGTGAACCAATTCTTGTCATTGCACCCACCCCTCCCCAGTGTTGTGAGGCTGTTGCAAGTCTTGTGAGTTTGCTTGCACCGTTACTTTGCAGTGTTGACTTCCGGCCTTATTTTACAATTCATAACCCTGAGTTTGCACACTTGAATTCGATCCGAGAAGGGGAAACCTTCCCCCCAATGGTTTTAGGGGTGACAAATCTTTTCTTCCTTAAGGCTCTCCGTAATATCCCTCACATTGTCTCAGTGGGAAGTCTCCCTCCTAGTTCAAATAGGGTTGCCCTTTCGACTAGGTCTTCTACTGGAAGGGTTCCTGGTAGACCTGAAGGTCTTGGGCTTCAACAACTTTCCCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCTACAAAAGTTTTCTCCTTCAAGTTTGTTGAATGCGATTAAGCTACGGAGAGAGGGTCCTCTTTGTCTCATGACAGAACATAAGGAAGCCATTTGGACTACATATTCTGCCACAACTAAGCCGGACACCTCTATTTTGAATAGACTTATAGATGCTGGAGTCTCACCAAGAGTTGAGGAGTCTATGTCAGTTGTTAACAATGAGATACTGAGGAGACATTTCTTGGAGCTTACAACTAATTTTTTAGCCCCTTTTGGTCCATATTTTAGGACTACAGTGCCATTGGAAGGATCTTCTCCTTATGCAGATCCTCCTTCTTTGCCTCCATTTAATGCTGATGAATTTCTTGCAAGTTTATCAGCCAGAGGTCCAGGGAAGTTCATTTTAAAGAGAATGAAATCTAACTGGCTCAACTTCTACAGGCGGTTCCTGAATGGACCCAACTTCATGCCTTGGTTTCAGAGGAGGCGTGCTGTAGCTGAACAGGAGCAAGATAGATTGTGGAGGCATGCAAGAATGAAAGCTGATATAAAACAGCTTATATCTAAAATGTCTGAGTTGGAAATTGTGGATTCCTTCAATGTTATAGAGAGACTCCTACTTAGAGAATTACAGCAGCAACCTGGAAACGGAGGTATTGATTCTACAGCAACTTGTCAGAAACTGGTGGGAGATCTTCAGGCAGTTTTCAATGCACTTACAAAAGACATGCAACAACTCATGCTTTCAAATCCACAAAGGGCATCCCTTCTGCAAGGTGGTCTTCTTATGGTCCTCAAAGGCACCCTTCTTTTTAAGTCACTGCCTCTGATTGAGAGGATTTCTGTGACCTCGGACAAGTCATGGGCTGTGCAATAA 3468 0.4167 MFHGVVARGRFSLPAPSAPRNRNWAPCHAVVATPLLIAFELLLCIYLESLDVRGFAAVDLKIVFLPLLTFEIIILIDNFRMCKALMPGDEENMSDEAIWETLPHFWVAISMVFFIAATVFTLLKLSGDVGALGWWDLFINFAIAECFAFLVCTKWSNPVIHRNSREASSSSSTTIRYLDWNSGLVVSTEENQGRMCSLQDIGGHFMKVPIIAFQVLLCMHLEGTPACAIYIPLPVLFSPLFLLQGAGVLLSASKLGEKLVLLLRSGAGGGIYFRFSSRFHDCLGFLHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFCGYPPEIVKKMPKKELAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRICFEGEINVVLLPCRHRVLCSTCSEKCKKCPICRDSIAERLPVYDTNLVLFCCRSRWVRAWNCVLVPNSCIQASEFFVKKRLPKRWIVSLCAIRFDLEQGQLVEVCYPPGCLTHDEELEVAYSSFPDSVSQQQNRSSIHDCIFFFRFRRHLKSPSSNATRSSEITEVDKEFSPKPIEENSVSKRLSSKSSVNVSKYLYGFVFNRQRHDERLKRGGEQKSVVILSHSPYSSVFRPLLQIVGPLYFDIGKIALEHIAAYVSTWPDPIPGKQMDLPIGNATLKVNLPPAHSLHMENGVSFDESASPVAPFLPNNQSVPQGLFHDSDLFGAFRGLLLQLWLLWELLLIGEPILVIAPTPPQCCEAVASLVSLLAPLLCSVDFRPYFTIHNPEFAHLNSIREGETFPPMVLGVTNLFFLKALRNIPHIVSVGSLPPSSNRVALSTRSSTGRVPGRPEGLGLQQLSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQKFSPSSLLNAIKLRREGPLCLMTEHKEAIWTTYSATTKPDTSILNRLIDAGVSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFRTTVPLEGSSPYADPPSLPPFNADEFLASLSARGPGKFILKRMKSNWLNFYRRFLNGPNFMPWFQRRRAVAEQEQDRLWRHARMKADIKQLISKMSELEIVDSFNVIERLLLRELQQQPGNGGIDSTATCQKLVGDLQAVFNALTKDMQQLMLSNPQRASLLQGGLLMVLKGTLLFKSLPLIERISVTSDKSWAVQ 1155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02104 1155 ProSiteProfiles Zinc finger RING-type profile. 371 406 IPR001841 -
Cca11g02104 1155 PANTHER LD41638P 389 1117 - -
Cca11g02104 1155 SMART ring_2 371 405 IPR001841 -
Cca11g02104 1155 Coils Coil 828 833 - -
Cca11g02104 1155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 416 IPR013083 -
Cca11g02104 1155 CDD mRING-HC-C3HC5_CGRF1 370 406 - -
Cca11g02104 1155 SUPERFAMILY RING/U-box 362 419 - -
Cca11g02104 1155 PANTHER UNCHARACTERIZED 389 1117 IPR024224 GO:0005085
Cca11g02104 1155 Pfam Transmembrane Fragile-X-F protein 1 243 IPR019396 -
Cca11g02104 1155 Pfam Stabilization of polarity axis 703 790 - -
Cca11g02104 1155 Coils Coil 1040 1060 - -
Cca11g02104 1155 Pfam Zinc finger, C3HC4 type (RING finger) 368 410 - -
Cca11g02104 1155 ProSiteProfiles Tripartite DENN domain profile. 460 1024 IPR037516 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02104 Cca-Chr11 46622763 46637838 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02104 2 418 C3H Transcription Factor Family AT1G73950 73.923 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02104 - - gmx:100790861 1085.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02104 11 46622763 46637838 Cca11g02104 11 46622763 46637838 ECH