Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02102 ATGTATCCCTCAAATACCTCCCTCAACGGCAATGACCTAATCTCCTACCCTAACCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACTAATTCTTCAAAAGAAGAAACCACCAATTCCAATTACAATTACGCCCTCCCTCCTCCTCCTTTGTCCTTTTTCCAATCTCCCTTTGACGAAAATATCTTCCTCGAACACCACCATGACTTGCTCTTACTCCACCAGTCTCCAGCTGATCCTGGACTCATCAAAAACCTTGACGTTGTGGCCGAACTCGAACCGGTTCCTTGCGCCGGACACGGCGGCGCCACCGCGATGGAGCACACTCCAAGGAAGAGATCTTGCAAGAGAGACCGGCACAGCAAGATCAACACTGCACGAGGACTGAGGGATCGACGAATGAGGTTGTCCCTCGAAGTTGCAAAGAGGTTTTTCGGCTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTGGAGTGGCTACTAAACCAAGCAAAGGTTGAGATCAAACAACTTGCGAGAGAGAAAAGCAGTGTTGGTGGTGCCAAGAGTGCATCATCAACTTCGGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGTAGTGAGTGGAGAAGGAGAACTTAACGAGGAGCAAGAAGGGGCCAAGAGAAGAACAAGCAAGGTTTGTAGAAAGAGTGCATTCAATCTTATTGGTAAGGAATCGAGGGAAaaggcaagagcaagagcgagagaaagaacaagagAGAAGATGAGAACTCGGAGAGTGTTGGCTGAAGCATCAAACCTGAACCGTTTCAGTTCTAATTGGAACCCCTTTGAAACGGTTGAAGACTCTGCGGGTACTCAGAGCCAAAGCGTGAACCATCCCACCTTGAATTTGCACCTTCCTGAGCCTGAAGAACCAAGTTCTCACGCAAAGGAGCATTTGGGAACCGTAGAGGACATGGCTCATCATGAAGATAATTCTTTGGTGATCATGAACAAGTGGAGTCCAACTACTATGATCTTCAATTCTCTCAGCAACTCTGGAATCCTTCACGAACATCAATTTGCAGAATTTCAGTCATTGGGAAAACCTTGGGAAGCCTACAACAATCACATCTAG 1122 0.4581 MYPSNTSLNGNDLISYPNQPFCFRPFSFESNPTNSSKEETTNSNYNYALPPPPLSFFQSPFDENIFLEHHHDLLLLHQSPADPGLIKNLDVVAELEPVPCAGHGGATAMEHTPRKRSCKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKVEIKQLAREKSSVGGAKSASSTSECEGVSSLDEVVVSGEGELNEEQEGAKRRTSKVCRKSAFNLIGKESREKARARARERTREKMRTRRVLAEASNLNRFSSNWNPFETVEDSAGTQSQSVNHPTLNLHLPEPEEPSSHAKEHLGTVEDMAHHEDNSLVIMNKWSPTTMIFNSLSNSGILHEHQFAEFQSLGKPWEAYNNHI 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02102 373 Pfam TCP family transcription factor 119 258 IPR017887 -
Cca11g02102 373 MobiDBLite consensus disorder prediction 179 202 - -
Cca11g02102 373 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 16 343 IPR005333 GO:0003700
Cca11g02102 373 ProSiteProfiles R domain profile. 238 255 IPR017888 -
Cca11g02102 373 PANTHER TRANSCRIPTION FACTOR TCP18 16 343 - -
Cca11g02102 373 MobiDBLite consensus disorder prediction 185 199 - -
Cca11g02102 373 ProSiteProfiles TCP domain profile. 119 177 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02102 Cca-Chr11 46569339 46570765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02102 115 252 TCP Transcription Factor Family AT3G18550 45.283 9.86e-28 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Cca11g02102 TCP 5.9e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02102 - - gmx:100803669 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00731 03 14452771 14454446 Cca11g02102 11 46569339 46570765 ECH
Cca07g02352 07 52102017 52103221 Cca11g02102 11 46569339 46570765 ECH
Cca09g00438 09 10648652 10650630 Cca11g02102 11 46569339 46570765 ECH
Cca11g02102 11 46569339 46570765 Cca11g02102 11 46569339 46570765 ECH