Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02095 ATGGATGCACCACGTGTCACTCGGAGCTCTGGCGACCACAATATCCGTTGCGTCGGATTGCTCGCTTCTGATTCTTCTGCCACCACGATTCCTCCGTCACGTCATTCCGGCGACCGCCACATGATATCCGGGGACTTCGATTCCTCGAAAAATCCAAACCTCGTCACTGCCATTGAAAAAAAGGAAGAGTCTCTGCAATCAAGTTCAAAGCCTTTGAAGGCTAAAACTACCAAAGCTGAGAGACGAGCCTTGCAGGAGGCACAGAGAGCTGCCAAAGCGGCTTTTAAAGGTGAGGGAAGTAAAGCAGTGGGTGAATCTGATAGAGCTGCCCAGGGTAAAAGTACAAAGCAGTCATCGGAAAAGAAAGGTGGTCCTCCCTGTGCGTCTCCTGGGGATACTGATATGAAAGCAGGAGATCGTTCTTTGGAGAAAGATAGGAAAAAGGATGCTCCTCCTCCCCAAATTCAATTTGGCAGCAAAAGCCAAATGGAAAGGGCTAGAAAGCGTGGAGTGGTCAATCCAACTGAATCTGGAAACGGAGTTGAATTATTTCAGCATTTGCCTCAATATGAACACAGGACTCAGCTTTCTAATCTCGAATCAAAGTTTTTCCACAATGATTTAGTACATCCTGCTGTATTAGAGGTTGGACTGCGTTATTCAACAGGAGATATATCAGGGGGTAATGCTCGTTGTATTGCAATGCTAAGGGCATTTCAAGATGCCATTAGAGATTACTGCACACCACATGAAAAGGTCCTTGTTAGGGATTTAACTTCAAAAATCAATAGTTATGTATCTTTCTTTACGGAATGTAGACCACTTTCTATGAGCATGGGAAATGCAATTAGGTTTGTAAAGAGTCGTATTGTCAATCTTCCTTTAAGTCATTCCGAGTTTGAGGCAAAAGCAGCCCTGTGTTCTGATATTGACCGGTTCATAAATGAAAAGATAGTTCTCGCTGATAAGGTGATTGTCCAACATGCTTTTACAAAGGTGAAGGATGGGGATGTGCTTCTCACATATGGATTGTCATGTGTTGTTGAGATGACTTTTTTATATGCCCATGAGCTGGGAAAACAGTTCCGTGTTGTGGTGGTAGATTCACGGCCAAGGCTTGAAGGTCAGGCCTTACTTCGTGGGCTAGTGGCTAAGGGCCTGAGTTGCACATATATTCATATAAATGCTGTTTCTTATATCATGCATGAGGTCACTCGAGTTCTTCTGGGAGCTTCTGCAGTTTTTTCTGATGGAACTGTCTATTCAAGGGTTGGGACTTCTTGTGTTGCAATGGTGGCTCATGCATTTCGTGTTCCTGTATTAATCTGTTGTGAAGCATATAAATTTCATGAGAGGGTGCTACTCGATTCAATATGTTCTAACGAACTAGGCGATCCAGATGCTATTGCCAGGGTTGCTGGACGAATGGATGTCGATTATCTGAAAAATTGGGCCAGTGAAGACAATTTGAAGCTTTTGAATTTGATGTATGATGCTACTCCTTCGGATTATGTCTCGGTTATTGTGACAGATTATGGCATTGTCCCTCCTACAAGCGTGCCTGTAATAGTACGGGAATATCTACGAGAGCATTTGTTATTCTAG 1605 0.4361 MDAPRVTRSSGDHNIRCVGLLASDSSATTIPPSRHSGDRHMISGDFDSSKNPNLVTAIEKKEESLQSSSKPLKAKTTKAERRALQEAQRAAKAAFKGEGSKAVGESDRAAQGKSTKQSSEKKGGPPCASPGDTDMKAGDRSLEKDRKKDAPPPQIQFGSKSQMERARKRGVVNPTESGNGVELFQHLPQYEHRTQLSNLESKFFHNDLVHPAVLEVGLRYSTGDISGGNARCIAMLRAFQDAIRDYCTPHEKVLVRDLTSKINSYVSFFTECRPLSMSMGNAIRFVKSRIVNLPLSHSEFEAKAALCSDIDRFINEKIVLADKVIVQHAFTKVKDGDVLLTYGLSCVVEMTFLYAHELGKQFRVVVVDSRPRLEGQALLRGLVAKGLSCTYIHINAVSYIMHEVTRVLLGASAVFSDGTVYSRVGTSCVAMVAHAFRVPVLICCEAYKFHERVLLDSICSNELGDPDAIARVAGRMDVDYLKNWASEDNLKLLNLMYDATPSDYVSVIVTDYGIVPPTSVPVIVREYLREHLLF 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02095 534 MobiDBLite consensus disorder prediction 63 87 - -
Cca11g02095 534 Gene3D - 321 528 IPR042529 -
Cca11g02095 534 MobiDBLite consensus disorder prediction 136 151 - -
Cca11g02095 534 MobiDBLite consensus disorder prediction 25 179 - -
Cca11g02095 534 Pfam Initiation factor 2 subunit family 225 517 IPR000649 GO:0044237
Cca11g02095 534 SUPERFAMILY NagB/RpiA/CoA transferase-like 206 527 IPR037171 -
Cca11g02095 534 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 59 533 - -
Cca11g02095 534 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 59 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02095 Cca-Chr11 46478437 46482831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02095 70 533 Eukaryotic Initiation Factors Gene Family AT5G38640 64.523 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02095 K03680 - gmx:100795256 823.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00727 03 14304977 14309622 Cca11g02095 11 46478437 46482831 ECH
Cca11g02095 11 46478437 46482831 Cca11g02095 11 46478437 46482831 ECH