Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02085 ATGGCAGAAGTAGAAGACACTCTTCAAGCCTCGCCCATGGACGAAACCAAAAACAAGATTAAGAAACATAAGAAGAAGCGCGACAAAAAAAGGCCTCGCGATATTGCTACCGAGGAGCTTCCGGAAGAAGAAGAGAATGGGAATAATTCAGATAGCGATGGCGAATCCTCgaagaaggagaagaagaagaagaggaaaggagagagcgaagtggaagagaaaaaggtgaagaataaCGGTGGGTCTGGAATTATGAGCACTGAGTCATTCGATTCTCTTGGATTGTCTCAACCTACTTATAAGGCCATTATGGATATGGGATTCAACCACATGACTCAGATTCAAGCAAGAGCAATTCCGCCACTTTTGATTGGAAAAGATGTTCTTGGTGCTGCAAGGACTGGTTCTGGGAAAACTCTTGCCTTCTTAATTCCTGCTATGGAGCTGTTGTACAATGTGCAATTTAAACCTCGCAATGGAGCTGGTGTTGTTGTTATATGCCCAACTAGAGAGCTCGCAATACAGACTCATGCTGTGGCCAAGGAGCTTCTCAAGTACCACTCACAAACTCTTGGTTTGGTTATTGGAGGTTCAACTAGAAAAATTGAAGCTGAACGCATTGCTAAAGGTATAAATCTATTGGTAGGAACTCCTGGTCGTCTTCTAGATCATCTGCAAAATACAAAAGGATTCATATATAAAAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATTATTAAGATCCTTCCGAAGGATAGGCAAACAGCTTTATTTTCGGCTACGCAAACAAAGAAGGTTGAGGATCTTGCCCGCTTGTCATTTCAGACAACTCCTATCTATATTGATGTAGATGACGGGAGAACCAAGGTCACAAATGAAGGGTTGCTTCAGGGTTACGTTGTTGTTCCCTGTGCCAAGCGCTTTATTGTTCTTTATTCGTTTTTGAAGAGGCACCAGTCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCACGCAGACATTCTTAATCTCATTCGGATGAATTGCTCAAGTATTCATGGAAAACAAAAGCAGCAGACCCGAACAACTACCTTCTTTGACTTCTGCAAAGCTGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGCAGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGTGAAGGCGGAAAAGGAAATGCTTTGCTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTATCTGAAGGCAGCTAAGGTTCCTGTTAAAGAGTATGCATATGATGAAAAGAAGGTGGAAAATGTACAATCTTACCTGGAGAAGTTGGTTGTCAACAATTTTTATTTGAACAAGATGGCAAAAGAAGCTTATAGATCATACCTATTAGCATACAATTCACATTCCATGAAGGATATATTCAATGTTCATCGTCTTGATTTTCAGGCCGTTGCTTCTTCGTTCTGTTTTTCAAACCCACCAAATGTGACTCTGAACATAAACAGCAGTAAGCAAAGGAAGAAAATGCGTAAAGTTGATGGAAGTAGGCATGGATTCGACGATATCAATCCTTATGGAAAGAGAAATGCCGATGACAAGCGCCAGTTTGTGAGGTACTAG 1722 0.3995 MAEVEDTLQASPMDETKNKIKKHKKKRDKKRPRDIATEELPEEEENGNNSDSDGESSKKEKKKKRKGESEVEEKKVKNNGGSGIMSTESFDSLGLSQPTYKAIMDMGFNHMTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAMELLYNVQFKPRNGAGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSTRKIEAERIAKGINLLVGTPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKDRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLLQGYVVVPCAKRFIVLYSFLKRHQSKKVMVFFSSCNSVKFHADILNLIRMNCSSIHGKQKQQTRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAYDEKKVENVQSYLEKLVVNNFYLNKMAKEAYRSYLLAYNSHSMKDIFNVHRLDFQAVASSFCFSNPPNVTLNINSSKQRKKMRKVDGSRHGFDDINPYGKRNADDKRQFVRY 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02085 573 SMART helicmild6 348 429 IPR001650 -
Cca11g02085 573 MobiDBLite consensus disorder prediction 1 89 - -
Cca11g02085 573 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 58 567 - -
Cca11g02085 573 SMART DUF4217_3 469 532 IPR025313 -
Cca11g02085 573 SMART ultradead3 107 312 IPR014001 -
Cca11g02085 573 MobiDBLite consensus disorder prediction 537 565 - -
Cca11g02085 573 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 88 116 IPR014014 GO:0003724
Cca11g02085 573 CDD DEADc_DDX18 99 296 IPR044773 GO:0003724|GO:0005524
Cca11g02085 573 MobiDBLite consensus disorder prediction 51 77 - -
Cca11g02085 573 Pfam Helicase conserved C-terminal domain 324 428 IPR001650 -
Cca11g02085 573 Gene3D - 33 298 IPR027417 -
Cca11g02085 573 Pfam Domain of unknown function (DUF4217) 470 530 IPR025313 -
Cca11g02085 573 PANTHER RNA HELICASE 58 567 - -
Cca11g02085 573 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 240 248 IPR000629 -
Cca11g02085 573 CDD SF2_C_DEAD 309 439 - -
Cca11g02085 573 MobiDBLite consensus disorder prediction 547 565 - -
Cca11g02085 573 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 321 468 IPR001650 -
Cca11g02085 573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 443 IPR027417 -
Cca11g02085 573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 296 IPR027417 -
Cca11g02085 573 Gene3D - 309 549 IPR027417 -
Cca11g02085 573 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 119 294 IPR014001 -
Cca11g02085 573 Pfam DEAD/DEAH box helicase 112 283 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02085 Cca-Chr11 46414782 46420266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02085 88 447 Eukaryotic Initiation Factors Gene Family AT3G13920 31.044 1.38e-47 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02085 K13179 - gmx:100797375 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02085 11 46414782 46420266 Cca11g02085 11 46414782 46420266 ECH