Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02077 ATGGCTGGAGGGAGAAGGAGGAGGCACCACTTCAGCAGAATTCATGCATTCACATGTGGGAGAGCTTCCATGAGAGAGGAGCATTCACTAATAGGAGGCCCTGGCTTCTCAAGGAAAGTCTATTGCAATGACCCTGAACGTGCCATGGAGAGTCTTCTCAGTTATGGAGACAATTATGTCAGAACAACTAAGTACACATTGGCCACGTTCATCCCCAAGTCCTTGTTTGAGCAATTCAGGAGGGTTGCCAATTTCTACTTCCTCGTTTGTGCAGTTTTGTCTTTCTTTCCGGTCTCTCCTTACTCAGGCGTCAGTAATGTTGTTCCTCTACTGGTTGTGGTTGCTGCCACGATGGTCAAAGAGTTCATTGAGGATTTTAGGAGGAAACAACAGGATATAGAGATGAATAACAGAAAAGTTAAAGTGCATCGTGGAGATGGTGTTTTTGACATTTCTAAATGGAGGGATTTGAAAGTTGGCGATGTAGTGAGGGTGGAAAAAGATGAATTTTTTCCTGCTGATCTCATCTTACTTGCATCAAACTATGATGATGCAATTTGCTATGTTGAGACCATGAATCTTGATGGAGAGACAAATCTGAAACTGAAACAAGCACTGGAAGGAAGTTCAATGTTGCAAGAAGACTCGAACTATCAAAATTTCAGGGCTGTCATCACATGTGAAGATCCAAATGCAAATTTGTACACATTTGTTGGTAGTCTGGATCTTGAGGATCAGCAATATCCTCTTGCACCTCAGCAGCTACTGCTTAGGGATTCTAAGCTGAGGAACACAGATTTTATTTATGGAGTGGTAATCTTTACCGGACATGATACAAAGGTTATGCAGAATGCAACAGATCCTCCATCCAAGAGAAGCAAAATTGAGAAAAGGATGGATAAGATTATCTACTGCCTGTTCGTTGTACTTATTTTGATTTCTTTCATTGGGTCCATATTCTTTGGGCTTATGACAGATGATGACCTTGAAAATGGAAGAATGAAGAGATGGTACCTTAGGCCAGATAATACCGAAATTTACTATGATCCAAATAGCCCAGTAGTTGCGGCAATTCTGCATTTCTTGACAGCACTTATGTTGTATGGTTACTTGATTCCAATTTCCTTGTATGTATCCATAGAAATTGTAAAGGTTCTGCAAAGCATTTTCATCAACCAGGATGTGCACATGTATTATGCGGAAACTGACAAGCCAGCACATGCTCGTACATCAAATTTGAATGAAGAACTTGGCCAAGTTGATACCATACTTTCAGATAAGACTGGAACTTTGACTTGCAACTCTATGGAATTTATCAAGTGTTCTATTGCTGGGGTTGCTTATGGACGAGGAGCTACAGAAGTTGAGAGAGCTCTATCTAGGAGACAGGAAACACCTTTTAGTCAAGAGTTTAAAGAAAGAATTAGTGAATCAAAGCCATCCATTAAAGGGTTTAACTTTAAGGATGAAAGGATCATGAATGGAAATTGGGCCAAAGAACCCAATGCCAATGTAATCCAGAACTTCTTACGGTTGCTGGCTGTATGCCATACTGCAATACCTGAAATTGATGAAGAAACTGGTAAGGTTTCATATGAAGCTGAATCACCGGATGAGGCAGCTTTTGTGATTGCAGCCAGGGAACTCGGATTTGAATTTTATGAAAGGACACATACAACTATTTCATTGCGTGAATTAGACCCCATGTCTGGCAACAAAATTGAAAGATCCTACAAACTTTTGAATATATTAGAGTTCAGTAGTGCAAGAAAGCGGATGTCTGTGATTGTAAGAGATGAGGAGGGTAAATTACTACTACTTAGCAAAGGTGCTGACAGTGTAATGTTTGAAAGAATTGCAAAGAATGGAAGGGAATTTGAAGAGTACACAAAACAGCACATTAGTGAATATGCTGATTCTGGTTTGAGGACCTTGATACTTGCATATCGTGAACTCAACGAGGAAGAGTACAATCAGTTTAATAAAGAGTTTACAGAGGCCAAGAACTTGGTGAGTGCAGACCAGGAGCAGATTGTTGAGAGAATAATACAAAGTATTGAGAAAGATTTAATTCTTCTTGGTGCTACTGCAGTTGAAGACAAACTACAAGACGGGGTTCCTGAATGTATTGACAAACTAGCACAGGCTGGGATTAAGCTATGGGTTTTAACTGGTGATAAAATGGAGACAGCAATTAATATTGGATTTGCTTGTAGTTTACTCAGACAAGGAATGAAACAAATTATAATTAGCTCAGATACTCCAGAAACAAAATCATTGGAGAAAATGGAGGACAAGTCTGCTGCTGAAGTGGCAATTAAGTCAAGTGTTATTCGTCAACTAAGGGAGGCAAAGACATTGCTTACTACATCAGACGAAAACTTTGAGGCTTTAGCCCTGATCATTGATGGGAAGTCTCTTACTTATGCACTAGAAGATGATGTAAAGGATTCGTTTCTTGAACTTGCCATTGGTTGTGCATCTGTTATCTGCTGTCGTTCATCTCCCAAGCAGAAAGCACTTGTTACCAGATTGGTAAAGATGAGAACTGGTAGTACAACTCTAGCTATTGGAGATGGGGCAAATGATGTTGGAATGCTCCAAGAAGCAGACATTGGAATTGGTATCAGTGGTGTTGAAGGAATGCAGGCAGTTATGTCAAGTGATATTGCAATAGCCCAATTTCGGTATCTAGAGCGCTTACTACTTGTGCATGGACATTGGTGTTACAGAAGGATCTCATCAATGATTTGCTACTTCTTTTACAAGAATATTGCCTTCGGCTTCACTCTTTTCTTCTTCGAGTTGTATGCCTCATTCTCTGGGCAAGCTGCATACAACGACTGGTTCTTGTCACTATACAATGTATTCTTCACTTCACTTCCTGTAATTGCATTGGGTGTGTTTGATCAGGATGTGTCTTCTAAGCACTGTCTCAGGTTTCCATTATTATATCAAGAAGGCATCCAAAACATCCTATTTAGCTGGAAACGAATCATAGGTTGGGCACTGAATGGAGTTGTGACTTCTGCCATCATATTCTTCTTTTGCATCCGTACTATGGAACACCAGGCATTCCGAAAAGGCGGTCAAGTCGTGGGGCTGGAAGTTCTTGGTGCCACCATGTACACCTGTGTTGTGTGGGTGGTGAATTGCCAAATGGCATTATCTATCAGTTACTTCACTTACATACAACATATATTCATCTGGGGTAGCATCATATTCTGGTATATATTCCTCCTGGCATATGGAGCCATAGACCCATCCTTCTCAACCACTGCCTATAAGGTCTTCATTGAAGCTCTTGCACCAGCCCCATCTTTCTGGTTCATCACTTTGCTCATTCTCATTGCTTCCCTCCTTCCATATTTCGTCTACGCTTCCATCCAAATGCGCTTCTTCCCCATGTATCATCAAATGATACAGTGGATAAGAAAAGATGGGCAAACAAGTGATCCAGAATACTGTGATATGGTAAGGCAGCGATCAATAAGACACACAACAGTTGGAACCACAGCTCGTTTGGAAGCGTCCAAACGACTTGAAGCATCCAAAAGACTTGAAATATCCGTCCATTCTTCAGCATCCAAAAGAATTGAGCTATCCAATTTTGCTGCATCCAAACGTTCTGAAGGGAATTCTGAGGACCGATAA 3654 0.4075 MAGGRRRRHHFSRIHAFTCGRASMREEHSLIGGPGFSRKVYCNDPERAMESLLSYGDNYVRTTKYTLATFIPKSLFEQFRRVANFYFLVCAVLSFFPVSPYSGVSNVVPLLVVVAATMVKEFIEDFRRKQQDIEMNNRKVKVHRGDGVFDISKWRDLKVGDVVRVEKDEFFPADLILLASNYDDAICYVETMNLDGETNLKLKQALEGSSMLQEDSNYQNFRAVITCEDPNANLYTFVGSLDLEDQQYPLAPQQLLLRDSKLRNTDFIYGVVIFTGHDTKVMQNATDPPSKRSKIEKRMDKIIYCLFVVLILISFIGSIFFGLMTDDDLENGRMKRWYLRPDNTEIYYDPNSPVVAAILHFLTALMLYGYLIPISLYVSIEIVKVLQSIFINQDVHMYYAETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGRGATEVERALSRRQETPFSQEFKERISESKPSIKGFNFKDERIMNGNWAKEPNANVIQNFLRLLAVCHTAIPEIDEETGKVSYEAESPDEAAFVIAARELGFEFYERTHTTISLRELDPMSGNKIERSYKLLNILEFSSARKRMSVIVRDEEGKLLLLSKGADSVMFERIAKNGREFEEYTKQHISEYADSGLRTLILAYRELNEEEYNQFNKEFTEAKNLVSADQEQIVERIIQSIEKDLILLGATAVEDKLQDGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMKQIIISSDTPETKSLEKMEDKSAAEVAIKSSVIRQLREAKTLLTTSDENFEALALIIDGKSLTYALEDDVKDSFLELAIGCASVICCRSSPKQKALVTRLVKMRTGSTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTLFFFELYASFSGQAAYNDWFLSLYNVFFTSLPVIALGVFDQDVSSKHCLRFPLLYQEGIQNILFSWKRIIGWALNGVVTSAIIFFFCIRTMEHQAFRKGGQVVGLEVLGATMYTCVVWVVNCQMALSISYFTYIQHIFIWGSIIFWYIFLLAYGAIDPSFSTTAYKVFIEALAPAPSFWFITLLILIASLLPYFVYASIQMRFFPMYHQMIQWIRKDGQTSDPEYCDMVRQRSIRHTTVGTTARLEASKRLEASKRLEISVHSSASKRIELSNFAASKRSEGNSEDR 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02077 1217 Pfam Phospholipid-translocating P-type ATPase C-terminal 885 1135 IPR032630 -
Cca11g02077 1217 Pfam Phospholipid-translocating ATPase N-terminal 40 105 IPR032631 -
Cca11g02077 1217 SFLD p-type atpase 406 908 IPR044492 -
Cca11g02077 1217 SUPERFAMILY Calcium ATPase, transduction domain A 137 285 IPR008250 -
Cca11g02077 1217 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 55 1142 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cca11g02077 1217 SUPERFAMILY Calcium ATPase, transmembrane domain M 45 1135 IPR023298 -
Cca11g02077 1217 Gene3D - 561 668 IPR023299 GO:0000166
Cca11g02077 1217 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 484 694 IPR023299 GO:0000166
Cca11g02077 1217 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Cca11g02077 1217 PRINTS P-type cation-transporting ATPase superfamily signature 743 753 - -
Cca11g02077 1217 PRINTS P-type cation-transporting ATPase superfamily signature 857 876 - -
Cca11g02077 1217 SUPERFAMILY HAD-like 419 912 IPR036412 -
Cca11g02077 1217 Pfam Cation transport ATPase (P-type) 525 618 - -
Cca11g02077 1217 Gene3D - 116 286 - -
Cca11g02077 1217 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 823 940 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g02077 1217 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Cca11g02077 1217 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1181 - -
Cca11g02077 1217 Gene3D - 689 897 IPR023214 -
Cca11g02077 1217 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1181 - -
Cca11g02077 1217 SFLD C1.7: P-type atpase like 406 908 - -
Cca11g02077 1217 CDD P-type_ATPase_APLT_Dnf-like 57 1017 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02077 Cca-Chr11 46336613 46342291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02077 10 1183 Primary Pumps ATPases AT3G25610 70.374 0.0 1781
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02077 K01530 K14802 gmx:100799312 2182.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00717 03 13951416 13962714 Cca11g02077 11 46336613 46342291 ECH
Cca11g02077 11 46336613 46342291 Cca11g02077 11 46336613 46342291 ECH