Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02074 ATGGAAAACATAGACACTTCAAAATTTCCACACCAATCTCAAAACCAAAACAAGAATCTTTCCTTGATGCCTATTGAGATAGACAAATCCTATGAGAAGAGAGTCGTGAAGGTTCCAACAGTAGGAAACAAGAGAGAGAAAAGGTTTCTTGGGGTGAGACAAAGGCCTTCAGGAAGATGGATTGCTGAGATCAAGGGCTCCTCACAGAAACTAAGGCTTTGGTTAGGAACTTTTGACAAAGCAGAAGATGCTGCCATGGCTTATGACTATGCTGCAAGGCTTCTTAGAGGGAGAAATGCCAAAACCAACTTTCCAAACCCTGGAACCATGAACACTCATGAGGAAGACTGCAACATTTTGGGTAAGAATCCTAGGGCTTACCAGCTTCTTAAGCATGTAGTGATGAAGAACCATGCACTTTCCACAGTCATGCCTTGGAAAAACCAAATCATGATGAGAGACAAATTTGACACCCTTGTTGAGGAAACTATAGTCTGTTCCATTCCTGAACAAGGCTCTGATGGGTGCTGTGGAATTTCATTAGGAAGTTCTAAGGTTTATTCTTCTGTTGTTGTTGCTCCTTCTTTTAGTGCTTCTCATGAAGAAACCCCCTAA 615 0.4179 MENIDTSKFPHQSQNQNKNLSLMPIEIDKSYEKRVVKVPTVGNKREKRFLGVRQRPSGRWIAEIKGSSQKLRLWLGTFDKAEDAAMAYDYAARLLRGRNAKTNFPNPGTMNTHEEDCNILGKNPRAYQLLKHVVMKNHALSTVMPWKNQIMMRDKFDTLVEETIVCSIPEQGSDGCCGISLGSSKVYSSVVVAPSFSASHEETP 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02074 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110-LIKE 1 202 - -
Cca11g02074 204 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Cca11g02074 204 Gene3D AP2/ERF domain 47 106 IPR036955 GO:0003700|GO:0006355
Cca11g02074 204 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Cca11g02074 204 MobiDBLite consensus disorder prediction 1 21 - -
Cca11g02074 204 SUPERFAMILY DNA-binding domain 49 105 IPR016177 GO:0003677
Cca11g02074 204 Pfam AP2 domain 50 97 IPR001471 GO:0003700|GO:0006355
Cca11g02074 204 CDD AP2 47 106 IPR001471 GO:0003700|GO:0006355
Cca11g02074 204 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Cca11g02074 204 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Cca11g02074 204 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02074 Cca-Chr11 46319208 46320082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02074 33 106 AP2-EREBP Transcription Factor Family AT5G19790 60.811 8.57e-25 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca11g02074 AP2 5.7e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02074 - K09286 gmx:100807374 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02074 11 46319208 46320082 Cca11g02074 11 46319208 46320082 ECH