Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02068 atggggagcgacagcgaggcagagaAGTCGGCGCAGAAAGAGAAGGAAAAGAAGATATTGGCGCTGTCTCCCATTGCTAAACCCCTCGCCGGCAAGAAGCTTTGCAAGCGAACCCTTAAACTTGTTCGTAGAGCTTCTCAACACAAATGCTTAAAGAGAGGAGTCAAGGAGGTCGTTAAGAGTATACGGAGAGGTCAAAAAGGGTTGTGTGTCATAGCTGGGAACATATCACCCATTGATGTCATCACACATGTTCCTATCCTCTGTGAAGAGGCTGACATTCCATACATATATGTCCCTTCCAAAGAAGAGCTTGCAGGCGCAGGAGCAACGAAGAGGCCTACTTGCTGTGTTCTGGTAACGACAAAGCCTGCAAAGGGTGAAATAGAACAAGGGGAACAAGAGAAGCTAAAGTCAGATTATGATCAAGTTGTATCAGAAGTTTCTGAGGTTACAGCTTCACTTTTTTGA 471 0.4268 MGSDSEAEKSAQKEKEKKILALSPIAKPLAGKKLCKRTLKLVRRASQHKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIPYIYVPSKEELAGAGATKRPTCCVLVTTKPAKGEIEQGEQEKLKSDYDQVVSEVSEVTASLF 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02068 156 Gene3D - 16 152 IPR029064 -
Cca11g02068 156 PRINTS Ribosomal protein L7A/RS6 family signature 51 65 IPR018492 -
Cca11g02068 156 PRINTS Ribosomal protein L7A/RS6 family signature 70 83 IPR018492 -
Cca11g02068 156 PRINTS Ribosomal protein L7A/RS6 family signature 86 96 IPR018492 -
Cca11g02068 156 PRINTS Ribosomal protein L7A/RS6 family signature 96 110 IPR018492 -
Cca11g02068 156 PANTHER - 2 155 - -
Cca11g02068 156 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 155 - -
Cca11g02068 156 PRINTS High mobility group-like nuclear protein signature 24 37 IPR002415 GO:0003723|GO:0005730
Cca11g02068 156 PRINTS High mobility group-like nuclear protein signature 37 52 IPR002415 GO:0003723|GO:0005730
Cca11g02068 156 PRINTS High mobility group-like nuclear protein signature 54 64 IPR002415 GO:0003723|GO:0005730
Cca11g02068 156 PRINTS High mobility group-like nuclear protein signature 98 110 IPR002415 GO:0003723|GO:0005730
Cca11g02068 156 SUPERFAMILY L30e-like 21 131 IPR029064 -
Cca11g02068 156 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 39 123 IPR004038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02068 Cca-Chr11 46256718 46258261 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02068 51 123 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 31.507 1.33e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02068 K11129 - gmx:100305515 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02068 11 46256718 46258261 Cca11g02068 11 46256718 46258261 ECH