Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02067 ATGGCACAAAATACTGTTTCTGGTGCTGACTCGCCTCGGCGACGTCTTTTACGAGATCAGGTTCAAGCGGTTAAAAGAAAGGATTCTGATCGCTATGAAATTGTTCCTATCCAAGATTCTTTGTCATTTGAGAAAGGATTCTTCATATTTATTCGTGCATGCCAGTTGTTGGCTCAAAAGAATGATGGAATCATATTAGTAGGAGTTGCAGGTCCATCTGGAGCAGGGAAAACTGTTTTCACTGAGAAGGTCCTCAATTTTATGCCAAGCATAGCTGTCATAACAATGGACAATTATAATGATTCTAGTAGAATTATTGATGGAAACTTTGATGACCCTCGGTTGACGGATTATGACACCTTGCTCGAAAATATACAGGGTCTTAAAGCAGGGAAACCTGTTCAAGTTCCAATATATGATTTCAAGTCTAGTTCTCGCATAGGTTACAGGACTATTGAAGTCCCTAGCTCTCGTATTGTAATCATAGAAGGCATTTATGCCTTAAGTGAAAAATTAAGGCCTTTGCTTGATCTTCGTGTTTCTGTCACTGGTGGAGTTCATTTTGACCTTGTCAAGCGTGTTTTGCGGGATATTCAACGTGCTGGTCAAGAGCCTGAAGAAATAATTCATCAAATTTCTGAAACGGTATATCCTATGTATAAAGCTTTTATTGAGCCAGATCTCCAAACAGCTCATATAAAAATTATTAACAAGTTTAATCCATTCTCTGGATTCCAAAATCCCACCTACATATTGAAGTCAACAAGAGTTGTGACAGTTGATCAAATCAAGGCAGTTATTGCTACGGAGCATACTGAAACCAAAGAGGAAACGTATGACATATTTCTACTGCCCCCTGGGGAAGACCCTGAAGCTTGTCAATCATATTTGAGAATGAGAAACCGTGATGGAAAGTACAATCTCATGTTTGAGGAATGGGTGACAGATAGTCCATTCATAATATCACCTAGAATTACGTTTGAGGTCAGCGTGCGCCTTCTCGGAGGCCTGATGGCCTTGGGATACACAATTGCAGCTATCCTGAAAAGAAGCAGCCATGTCTTTCATGATGATAAAGTGACCATAAAAACTGATTGGCTAGAACAACTTAATCGCACATATGTTCAGGTGCAAGGTAAAGACAGAAACGACTGCAAATTTGTAGCAGAGAAACTGGGGATGGATGGTTCCTATGTTCCTCGCACTTACATTGAACAAATTCAGCTAGAAAAGCTTGTAAACGATGTGATGGCATTGCCAGATGATCTTAAGACAAAACTCAGCATAGATGATGACTTTGTTTCAAGTCCCAAAGAGGCCCTTTCCAGAGCTTCTGCAGATAGAAGAATGAAGCATCTCAATCGTGGTATTTCACAGTCATATTCAACTCAAAGGGACAAGATTCTACCTAAGCTGACTAAACTTGCTATAAATAACAGAAGATTCGATGGAAGGGCGCTAGAATCACCTGCACCTATTGCTAACCAAGGAGTCATTACTCAACTTTCTGATCAAATTTCCACATTAAATGAAAGAATGGATGAATTCACCTCCCGAATTGAAGAGCTGAATTCAAAGTTTGCTATTCCAAAAGTTTCAGCCAGTCAACAAAACTTGGCTGTACAGGCTGAGGCCTGCAATGGCTCAGGCCCCACTTCTTTCTTTGTAACTGGATTAAGCAATGGTTCATTGACTGGATCACTGCTACCTAATTCTTCATCGTCTTCTCAATTGGCTAAAGAGTCTCCCCTGATGGAAGAGGTATTAGTTATTGCTCGAGGACAACGTCAAATCATGCATCAACTTGACACCCTGAGCAATCTTTTGCATGAATACTTTGGAGAAAGGTCACGCCTGGATAGACCAGACCAGACAGGCAGAATGCGTGAACCTGAATCCGTTGCCATCCCCCTGGTTCTGACTCTCGCCCTTGGTGCTGTTGGTGTGTTTTTGTTCAGAGGTTTGACATCCCAAAAGTAA 1980 0.4106 MAQNTVSGADSPRRRLLRDQVQAVKRKDSDRYEIVPIQDSLSFEKGFFIFIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIQGLKAGKPVQVPIYDFKSSSRIGYRTIEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFSGFQNPTYILKSTRVVTVDQIKAVIATEHTETKEETYDIFLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFHDDKVTIKTDWLEQLNRTYVQVQGKDRNDCKFVAEKLGMDGSYVPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDFVSSPKEALSRASADRRMKHLNRGISQSYSTQRDKILPKLTKLAINNRRFDGRALESPAPIANQGVITQLSDQISTLNERMDEFTSRIEELNSKFAIPKVSASQQNLAVQAEACNGSGPTSFFVTGLSNGSLTGSLLPNSSSSSQLAKESPLMEEVLVIARGQRQIMHQLDTLSNLLHEYFGERSRLDRPDQTGRMREPESVAIPLVLTLALGAVGVFLFRGLTSQK 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02067 659 ProSiteProfiles CYTH domain profile. 248 409 IPR023577 -
Cca11g02067 659 Pfam CYTH domain 269 403 IPR023577 -
Cca11g02067 659 Coils Coil 499 526 - -
Cca11g02067 659 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 7 647 - -
Cca11g02067 659 PRINTS Uridine kinase signature 64 81 - -
Cca11g02067 659 PRINTS Uridine kinase signature 131 146 - -
Cca11g02067 659 PRINTS Uridine kinase signature 187 197 - -
Cca11g02067 659 PRINTS Uridine kinase signature 223 236 - -
Cca11g02067 659 SUPERFAMILY CYTH-like phosphatases 257 406 IPR033469 -
Cca11g02067 659 Pfam Phosphoribulokinase / Uridine kinase family 67 235 IPR006083 GO:0005524|GO:0016301
Cca11g02067 659 Gene3D - 65 244 IPR027417 -
Cca11g02067 659 PANTHER URIDINE KINASE 7 647 - -
Cca11g02067 659 CDD UMPK_like 66 238 - -
Cca11g02067 659 Gene3D - 252 407 - -
Cca11g02067 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 235 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02067 Cca-Chr11 46247421 46255448 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02067 66 337 PRT Gene Family AT5G40870 26.241 8.36e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02067 K00876 - gmx:100803122 1201.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02067 11 46247421 46255448 Cca11g02067 11 46247421 46255448 ECH