Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02064 ATGGGGTGCTCATTCTCCGGTTTAAACGCACTCTACGACTCCGTTAACGGCGGAGGCGACGTTTGGATCAACGAGAACCGCTTCCGCATCCTCCGCCAGCTCGGAGAAGGTGGCTTCGCCTTCGTCTACCTCGTCAAGGAGGCGCTCAACGAATCTGCCGCCGGTGGCCTCGCCACCAAGCTCAAACActcctctcatctctctgATGACGGAACTTATGCTATGAAAAAGGTCCTCATTCAGAACAATGAACAGCTGGAGTTGGTGAGGGAGGAGATCCGTGTTTCATCCCTGTTCAATCACCCCAATCTGCTCCCACTTCTTGATCATGCCATAATTTCTGTTAAGCCTACCCAAGAAACATCTTGGAACCATGAAGCATACTTGTTATTTCCAGTTCATTTGGATGGAACATTGCTAGACAATGCCAAAATGATGAAAACCAAGAAGGAATTCTATTCCACCTCAGACGTGCTCCAAATATTTCGACAGCTTTGTGCAGGACTCAAGCACATGCACAGTTTTGATCCTCCATATGCACACAATGATGTCAAACCTGGTAATGTTCTCATAACACGTAGAAGAGGACAACCACCCCTTGCCATACTGATGGATTTTGGCAGTGCTCGTCCTGCCAGGAAGCAAATTGGTTCCAGATCAGAGGCACTCCAGTTGCAGGAATGGGCAGCTGAACATTGTTCTGCTCCTTTCCGAGCTCCTGAGCTGTGGGATTGCCCAAGCCATGCTGATATAGATGAGAGGACTGACATCTGGTCACTTGGATGCACATTATATGGAATAATGTATGGGGTATCTCCATTTGAATATGCACTTGGAGAGTCTGGTGGAAGCCTGCAATTGGCTATTGTAAACGCTCAGATCAAATGGCCAGCTGGACCTAAGCCTCCATATCCCGAAGCTCTTCATCAGTTCGTGTCATGGATGCTTCAGCCACAGGCTGCGATGCGGCCCCGGATAGATGATATCATTATCCATGTTGATAAGTTGATTGCAAAGTTCTCTCATTGA 1029 0.4723 MGCSFSGLNALYDSVNGGGDVWINENRFRILRQLGEGGFAFVYLVKEALNESAAGGLATKLKHSSHLSDDGTYAMKKVLIQNNEQLELVREEIRVSSLFNHPNLLPLLDHAIISVKPTQETSWNHEAYLLFPVHLDGTLLDNAKMMKTKKEFYSTSDVLQIFRQLCAGLKHMHSFDPPYAHNDVKPGNVLITRRRGQPPLAILMDFGSARPARKQIGSRSEALQLQEWAAEHCSAPFRAPELWDCPSHADIDERTDIWSLGCTLYGIMYGVSPFEYALGESGGSLQLAIVNAQIKWPAGPKPPYPEALHQFVSWMLQPQAAMRPRIDDIIIHVDKLIAKFSH 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02064 342 PANTHER - 1 342 - -
Cca11g02064 342 Pfam Protein kinase domain 65 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02064 342 SUPERFAMILY Protein kinase-like (PK-like) 20 332 IPR011009 -
Cca11g02064 342 SMART serkin_6 28 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02064 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Cca11g02064 342 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 1 342 - -
Cca11g02064 342 Gene3D Transferase(Phosphotransferase) domain 1 15 341 - -
Cca11g02064 342 ProSiteProfiles Protein kinase domain profile. 28 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02064 342 CDD STKc_16 27 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02064 Cca-Chr11 46215998 46221615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02064 33 332 EF-hand Containing Proteins AT4G04710 25.574 1.43e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Cca11g02064 Pkinase 1.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02064 K08856 - gmx:100803659 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02064 11 46215998 46221615 Cca11g02064 11 46215998 46221615 ECH