Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02061 ATGTCCTTGCAAGAACACATGCAATGGGTGGAGGTTGAAGAAAAGGAGCAGAAGGGGAAATTGTTTGTTGCAGTTTCAGCTAAGCAAATTTGGTATGATGTGCGCATAAAGAGGGAATTTGAGATGATTAGAGAGTGGACATGTAATGTGGAGTACTTGTGGAGAAAAATGGTGGTGGAGGTAGTTAATGACTACTTATCTGTGATGGTAAAAGAAGTTATCTCAGCCTTAAACCTTCCAGGGAGTTTATTAAATGAAGCACAAGAGCCGGAATCTGCTGAAGCTGTGGCTGGTGTTGACTTAAATACGACCTTGCCTGATAAGGAAACTCATGTCAAAGAGATCTTACCTGAGTTTCTAAAAGAAATTGGCCCCAATGGTGGTGCTTGTGAAGTGGTTTCAGGTGCTAACTGTTTTGAAGAAATGACAACTTCCGACTGTTGGATACCTGTGAAGTTCTCTGAAGTTGAATTCTGCCCCGATGCTGTCATTGAATATCCACTGGCTTCCAAACGTGCAACTAAGGCATTTTGGATGGAACGATTGCAAAAACATCTTGTGTATCTTGGATGGAAAATTGAGTGGACAAATAAACTTGGCGTTAAACGCTATAGGTATCATGATAAACCAGGCCATAAACGTTACCTTTCACTCCTTGAAGTTTGTAAGGTTATGAAAAACAACCCTAACTCCTTGCAGTTCCAAAATGATCAGAGTATAATGCAGCATCCTGCAGTTGACTGTCATCTTTTAGAGGTGCCTCTTAATCCATCAGAAAATATTTCAACTGTGCCATTTTCTCCTGTTGAAGATGGAGTTGAAGATGAACCTGAGTTTTGTCCTCAAGCTGTTTTGCAATATTATTCTGCCCATATATCCAATAAGAATCGGGTTGATAAAAAAAAATGGATACCGAAAGCAAAGAAGCATCTGTTAGCAGAAGGATGGGTTTTTGACTATCCACCTCCAAATAATAAGAAAAGGGGAATAATATACATGTCTCCACAAAATCAGAAATTCCCAACACTCCATGCAGCATGCCGATTTTGTATCACAAAAAATACTCCTAAATGGGCTATGTCTGGCAATCAACCTTTAAATGTCTCAGGCATGAATGAGGAAAATGTTGATCAGCTACCCCAGTTGCTTCCAAAAGACGCTGAGTTGCAGGCTATGGATGGTGCTGCTGCTAGTAGATCAAGTGCAATTCGTAAGCGGAAAAGCTTGAGGGATTCAAAGGCCAACATACCTAACTGCCAAAGCAATGGATTGCCTCTATGGGTGCTAAGATCAAAGAAGAGGGTGCAAAAGGTGCCTGCCCCTTCTTTTTTACAGCAAAAACCTATAAATGTTCTGTCTTGGTTGATAGACAGCAACCTCATCTTACCAAGGTCGAAGGTTTACTATAAGGAAAAAGGCAGGTATCGTGCAGTCCGTACATTGGGTGAAGGTAAAATAACTCGTGATGGAATTAAGTGTAATTGTTGCATGAAGATATTCAGTTTTGTTGGCTTTGAAAATCATGTTGGTGGCAGTAGTACCTGCAGACCCTCTGCTAGTATCTTTTTGGAAGATGGTAGATCACTCTTGGATTGCCAGATAGAAATGATGCAAGATCATAACACAAGGGAAACTAGCGGAAAGTCCCTCAGTGAATTGTCTATAGCTGAGAATGACTACATTTGTTCTGTTTGCCACTATGGCGGTGAACTTATTTTATGTGATAAATGTCCATCTTCTTTTCATAAGACGTGTCTCGGTTTGGAGGAAATACCTGATGGTGACTGGTTTTGTCCATCTTGTCGCTGCGGGATTTGTGGCCAAAGTAAAATTGATGGAGATGAGGTTGGACATTCCCTAACTTGCATTCAGTGTGAACATAGATATCATGTTTGGTGCCTGAAAGATGGAGCTGTAGATATATCGGGATATCGCGGAAACTGTTTCTGTGGAAAAGACTGTGAAAAGATATATGAGGGCCTTCATAAATTATTAGGAAAACCAATTTCAGTGGGTGCGGACAAGCTAACTTGGACCTTGGTGAAGTTCATCGACCCTGATCATTGTGACATTGGTAGCATTAAAAGTGACTTATTGGCAGAAAGTTACAGCAAACTCAATCTGGCTCTTTCGggggagctatag 2145 0.4056 MSLQEHMQWVEVEEKEQKGKLFVAVSAKQIWYDVRIKREFEMIREWTCNVEYLWRKMVVEVVNDYLSVMVKEVISALNLPGSLLNEAQEPESAEAVAGVDLNTTLPDKETHVKEILPEFLKEIGPNGGACEVVSGANCFEEMTTSDCWIPVKFSEVEFCPDAVIEYPLASKRATKAFWMERLQKHLVYLGWKIEWTNKLGVKRYRYHDKPGHKRYLSLLEVCKVMKNNPNSLQFQNDQSIMQHPAVDCHLLEVPLNPSENISTVPFSPVEDGVEDEPEFCPQAVLQYYSAHISNKNRVDKKKWIPKAKKHLLAEGWVFDYPPPNNKKRGIIYMSPQNQKFPTLHAACRFCITKNTPKWAMSGNQPLNVSGMNEENVDQLPQLLPKDAELQAMDGAAASRSSAIRKRKSLRDSKANIPNCQSNGLPLWVLRSKKRVQKVPAPSFLQQKPINVLSWLIDSNLILPRSKVYYKEKGRYRAVRTLGEGKITRDGIKCNCCMKIFSFVGFENHVGGSSTCRPSASIFLEDGRSLLDCQIEMMQDHNTRETSGKSLSELSIAENDYICSVCHYGGELILCDKCPSSFHKTCLGLEEIPDGDWFCPSCRCGICGQSKIDGDEVGHSLTCIQCEHRYHVWCLKDGAVDISGYRGNCFCGKDCEKIYEGLHKLLGKPISVGADKLTWTLVKFIDPDHCDIGSIKSDLLAESYSKLNLALSGEL 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02061 714 ProSiteProfiles Zinc finger PHD-type profile. 559 604 IPR019787 -
Cca11g02061 714 SMART PHD_3 561 602 IPR001965 -
Cca11g02061 714 SMART PHD_3 603 655 IPR001965 -
Cca11g02061 714 SUPERFAMILY FYVE/PHD zinc finger 545 602 IPR011011 -
Cca11g02061 714 Pfam Tify domain binding domain 484 536 IPR032308 -
Cca11g02061 714 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 9 97 - -
Cca11g02061 714 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 183 711 - -
Cca11g02061 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 551 614 IPR013083 -
Cca11g02061 714 PANTHER PHD ZINC FINGER PROTEIN 9 97 - -
Cca11g02061 714 PANTHER PHD ZINC FINGER PROTEIN 183 711 - -
Cca11g02061 714 Pfam PHD-finger 561 603 IPR019787 -
Cca11g02061 714 SMART ring_2 562 601 IPR001841 -
Cca11g02061 714 SMART ring_2 603 650 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02061 Cca-Chr11 46199338 46202574 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02061 22 710 PHD Transcription Factor Family AT5G58610 30.717 4.58e-83 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca11g02061 TDBD 9.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02061 - - ccaj:109815079 1179.08