Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02057 ATGGCCGATGTAACCACCACCTTCCTCCGCCACCTCCCCGACGACGACCAAACCCCCTCTCCCTATTGGGATTTCGACTTCGACCGCCAAAACCAGGTCAATTTCGTCATGGATCTCTTCCACCAGCGCGTCGAACAGTCCCAACTCTCCGACGACGCCGTTTTTGGCGTCATCGACCTCGCCTTCCCCTCCGCCGACGACTTCTTTATCGGACGCTCCCTCTCCGTCGGATCCGACGACGACCACGACTTCGCTCTCCAAAACGACGTCCTCGCCTTCTGCGCGCATTCcgacgacgactacaacgaaaacgacgacgTTTCCACCATCCCCCTCTGCTGGGACGCGCTGCACTTAGACGacaccaacaccaacaccaacaccaacaccaacaccaacaccaccaccaacgccaacaacaacaACTACGACGATTTCGAGTGGGAGGAAGTCGTGGACGAGAGAGAGGTTCTGAGCATGCTCGACGAAGCCTCCGTCTCCGTCGGAATCGAAGAGGAGATCGATTCGCAGGAAGTGAGCAATTTGGAGTGGCAGGTTTTGCTGAACGCCAACACTTTGGAAGGGGCCAATTCGGAACCCTATTTCGCTGACAACGACAACGAGGATTACGTTTACACTGCCGAGTATGAAATGATGTTCGGCCAATTCAACGACAACAACGCCTTGGTGGGGAAGCCTCCGGCTTCTGCCTCCGCCGTCAGGGACCTTCCCACGCTGGTTCTCTCCGCCGATGACGTGGCCCATGACAACGCCCTTTGCGCGGTTTGTAAGGAGGAGTTTGCCGTTGGGGAAATTGCCAAGGAGTTGCCGTGTTCGCACCGCTACCACGGGGACTGCATTGTGCCCTGGTTGGGGATCAGGAACACGTGTCCCGTTTGTCGCTTTGAGTTTCCCACTGATGATGCTGAGTATGAGCGTCGGAAGGCGCAGAGATCTCTTGTTTGa 966 0.5155 MADVTTTFLRHLPDDDQTPSPYWDFDFDRQNQVNFVMDLFHQRVEQSQLSDDAVFGVIDLAFPSADDFFIGRSLSVGSDDDHDFALQNDVLAFCAHSDDDYNENDDVSTIPLCWDALHLDDTNTNTNTNTNTNTTTNANNNNYDDFEWEEVVDEREVLSMLDEASVSVGIEEEIDSQEVSNLEWQVLLNANTLEGANSEPYFADNDNEDYVYTAEYEMMFGQFNDNNALVGKPPASASAVRDLPTLVLSADDVAHDNALCAVCKEEFAVGEIAKELPCSHRYHGDCIVPWLGIRNTCPVCRFEFPTDDAEYERRKAQRSLV 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02057 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 307 IPR013083 -
Cca11g02057 321 Pfam Ring finger domain 260 301 IPR001841 -
Cca11g02057 321 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 25 55 - -
Cca11g02057 321 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 65 319 - -
Cca11g02057 321 SUPERFAMILY RING/U-box 250 307 - -
Cca11g02057 321 SMART ring_2 260 300 IPR001841 -
Cca11g02057 321 PANTHER - 65 319 - -
Cca11g02057 321 PANTHER - 25 55 - -
Cca11g02057 321 CDD RING-H2_RNF126_like 260 301 - -
Cca11g02057 321 ProSiteProfiles Zinc finger RING-type profile. 260 301 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02057 Cca-Chr11 46160798 46162119 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02057 109 307 C3H Transcription Factor Family AT5G60820 46.256 4.53e-52 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02057 - - gmx:100794303 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02057 11 46160798 46162119 Cca11g02057 11 46160798 46162119 ECH