Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02055 ATGTCGTCGATTGGTTCGCCGAAGAAGCGGCTGAAATCCCCAGTAGAGGGAGATGAGGGCGTTTGTTGCGGGATTTGCTTCGCCGAGCGCGGGGTTTCGATCGCAGGGGAAATCGATTGCTGCAGCCATTACTTTTGCTTCGTCTGCATCATGGAATGGGCCAGGCACGAGTCTCGATGCCCAATTTGCCGCCAGAGATTCACCAACGTTCGCAGACTCCCTATGCTCGGCGTCATTTCTTCCTCTCGTGACGTTAAGGTCCCTCATCGTGATCAGGTTTATCATCCTCATGGTAATGTGGCAACTGGTCCTGTTGGTTCTTATGCTGAAACCAAATGTAGTACATGTCATGCTGAGACAGATGAACATCTCCTACTACTTTGTGATCTTTGTGATACTGCTTCACACACATATTGTGTTGGCCTGGGCTATACTGTTCCCGAAGGTGATTGGTTTTGTCACGATTGTGCTATATCCCGGGAGACCAATACCAATGTAGAATCAAACCACCAAAATGTTTCACCAGCAGCTGAGCCAAGTGTAACCATTGATATCTCTGATATTGTGAGGGAAACTGGCAGCCGGGTGGTTAAAAAACAGCCAAGGGCATCTTACTTACAACAGAATCTGTCATCTCCTTCACAGCAGAACCTATCATCTCCTTTACAACAGTACCTGTCATCTCCTTCTGTTATTCCGTCATCTGATAGATTGAGCAGATTCAAAGGAAAAAGTCCTGTTGTAGGTGTCCATCATATGCAGTGTAATATACAGTCTCTTCGTCAAAATTGGAATGCTTTGAGAACTGGTTCATTAAGGTTCCATGGCAATTCATTTCAACCTGGCAGCACAGTTAGTCAAAACCAAGATTCTAGTTCCTTATCACATCACATATTAGATGATTCGCATCCTATGGCTTCCACAAGCCTTCAACAATCCTCTGTCCAAGGTGGTCCTTCTAACAAAACGTTGACCAAGAGAGACTCTAAGGATGTTGACAAGGCTTGGAAAATGATGGACAGGGCAAAGAGGACTCAACCAACTCATCAAAGAACATGCAGTATTCCGCAGGGAGTGGATAAACCCTCAGGCAGTGGAGGAGCTAGAAAATTATCATTTGGACATTGTAATGTCCCAAAACTGAAAGATCAACATTCCAAAACATTAGACTTGAGGAACATTAAAAAAGAGATGTGTGAATATTCTAGACTTGACCACAATTTGAAAAATCGCTCAATTCTGAAGTTGGGAGAGAAAAAGCAAAGTAGGGTTACATGTGAGGAGATGATGCATGTGAGGGACTATACTGATCATTCAGAAGGATATTGTGATCGTCCATTGTCCAGAAAGGTCCATACTAGTATCCAGGCTGTTCCCTGTCGTGAAGATGGAGAGAGAAATGGTGCTGAGGAACAAAGCTCATCTGCTTGCTTGGTAACTTCAGCAGATTTAGCTTCCTCTCATGGCAAGTTTGGTGGTGTATTCTCCTATAATAGGGATGTGGATCTTGTTGATGAAGAAAAGAGATTGGCTAAAAGCTTTGAGGATGGAAACACAAGAACAACTGACGATGCTAAAACTGAGATCCAGTCTCTTGTTAAGTTGAATCTGAAGCTCTTAACTAGAGAAACAAAATTAGGTGTTGATACCTTCAAGGTAGTGGCAAGGCAGGCCACCCATACCATATTGGCTGCCTGCAGTTCCGAACAACCAAAGTCTAGTATATCCTCTAGTTCAGTATGCAGCCATGCCGACAATGCTCTTCAGTTTCAGAAATATACTTTAATGCCTAATTGTTGCAGGCAATGCTTTTATGCCTTTGTAAACAAGGTTGTCAATTCCATCATGTTGGAGAAACTAGGTAGCGCTTGA 1872 0.4359 MSSIGSPKKRLKSPVEGDEGVCCGICFAERGVSIAGEIDCCSHYFCFVCIMEWARHESRCPICRQRFTNVRRLPMLGVISSSRDVKVPHRDQVYHPHGNVATGPVGSYAETKCSTCHAETDEHLLLLCDLCDTASHTYCVGLGYTVPEGDWFCHDCAISRETNTNVESNHQNVSPAAEPSVTIDISDIVRETGSRVVKKQPRASYLQQNLSSPSQQNLSSPLQQYLSSPSVIPSSDRLSRFKGKSPVVGVHHMQCNIQSLRQNWNALRTGSLRFHGNSFQPGSTVSQNQDSSSLSHHILDDSHPMASTSLQQSSVQGGPSNKTLTKRDSKDVDKAWKMMDRAKRTQPTHQRTCSIPQGVDKPSGSGGARKLSFGHCNVPKLKDQHSKTLDLRNIKKEMCEYSRLDHNLKNRSILKLGEKKQSRVTCEEMMHVRDYTDHSEGYCDRPLSRKVHTSIQAVPCREDGERNGAEEQSSSACLVTSADLASSHGKFGGVFSYNRDVDLVDEEKRLAKSFEDGNTRTTDDAKTEIQSLVKLNLKLLTRETKLGVDTFKVVARQATHTILAACSSEQPKSSISSSSVCSHADNALQFQKYTLMPNCCRQCFYAFVNKVVNSIMLEKLGSA 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02055 623 ProSiteProfiles Zinc finger RING-type profile. 23 64 IPR001841 -
Cca11g02055 623 MobiDBLite consensus disorder prediction 324 347 - -
Cca11g02055 623 Pfam PHD-finger 113 157 IPR019787 -
Cca11g02055 623 MobiDBLite consensus disorder prediction 207 241 - -
Cca11g02055 623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 85 IPR013083 -
Cca11g02055 623 MobiDBLite consensus disorder prediction 302 323 - -
Cca11g02055 623 PANTHER HISTONE ACETYLTRANSFERASE 8 622 - -
Cca11g02055 623 SMART ring_2 23 63 IPR001841 -
Cca11g02055 623 MobiDBLite consensus disorder prediction 278 367 - -
Cca11g02055 623 SUPERFAMILY RING/U-box 12 71 - -
Cca11g02055 623 ProSiteProfiles Zinc finger PHD-type profile. 110 159 IPR019787 -
Cca11g02055 623 MobiDBLite consensus disorder prediction 207 235 - -
Cca11g02055 623 MobiDBLite consensus disorder prediction 278 295 - -
Cca11g02055 623 PANTHER PHD-FINGER FAMILY PROTEIN 8 622 - -
Cca11g02055 623 ProSitePatterns Zinc finger RING-type signature. 41 50 IPR017907 -
Cca11g02055 623 SMART PHD_3 112 157 IPR001965 -
Cca11g02055 623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 180 IPR013083 -
Cca11g02055 623 SUPERFAMILY FYVE/PHD zinc finger 107 158 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02055 Cca-Chr11 46142294 46147491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02055 65 160 C2H2 Transcription Factor Family AT3G01460 30.928 3.75e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca11g02055 PHD 6.4e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02055 - - ccaj:109808332 1211.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02055 11 46142294 46147491 Cca11g02055 11 46142294 46147491 ECH