Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02054 ATGGAGCTTCCTCAAGCGCGTCCGCTTGGAACCGAAGGGAGGAAACCAACGCACGACTTTCTGTCACTCTACAGTAATTCAACTGCCCAACAAGATCCAAGGCCATCTTCTCAAGGAAGTTACCTCAAGACCCATGATTTCTTGCAGCCACTAGAACGGCTAGAAACAAAAACCAGTGCCAAGGAAGAAGCCACAGATGAAATATCATCGGCGGTTCAAAAGCCACCAACTTCAGTTGAACACCTCTTACCTGGAGGAATTGGGACTTACAGTATTAGCCACATTTCATATGTCAATAATAATCAAAGGGTTCCGAAACCAGAGTCTTCCCTTTTCGTGCGTCAAGCAACTAGTACGGATAGGAATGATGACAACTCCAACTGCAGTTCATATACTTCAAGTGGTTTCACTTTGTGGGAAGAGTCATCGGGGAAAAGGGGAAAGACAGGAAAGGAGAATAATGCGGGCGAGAAACCCACTCTAGGAGAGTCTGCGGCAAAACTAGGGCAGTGGACATCAACGGAGCGGACTTCACAGTCGTTTTCTAACAACCGTCACAGCAGCTTCAGCTCTCGCTCTTCATCTCAGACAACTGGACAGAAAAACCAGAGTTTTATTGAAATGATGAAGTCTGCAAGGGATAGTGCCCCGGATGAAGTGCTAGAAAACGAAGAAACATTTTTTCTTAAGAAAGAACCCTCCAATACCCAAAGAGAATTGAGGGTGAAAGTGGATGGGAAGAGTACTGATCAAAAGCCAAACACACCGAGATCAAAACACTCCGCGACAGAGCAGCGGAGAAGGAGCAAAATTAATGACAGATTTCAAATGCTACGAGAGCTTATTCCGCACAGTGACCAAAAGAGGGACAAAGCATCATTTTTATTAGAGGTCATTGAGTATATTCATTTTTTACAAGAAAAGGTGCATAAGTATGAAGGTTCATTTCAAGGGTGGAGTAACGAGCCAGAAAAATTAATGCCTTGGCAGAGAAATAATGACAAGCCAGCAGAAAATTTTCAACCTCGTGCAACCGACAATGGGTCAAGTCCATCTCCAACACTGTTGTTTGCTTCAAAAGTTGACGAGAAAAATATCACCATCTCCCCAACAATTCCTGGGAGTACCCAGAACCTAGAATCTGGCTTGAGCACAGCAACTACATCCAAAACAATGGATCATCAGGCTGGAATCATGAACAACAAGGCTTTTCCAATTCCTATTCCTTCACAGCTAAATTTTTTCACTCCAACCCAAATTGGTGGTCCAGGTGGAGCTGTGCCTCAGCTCACACATAGATCGGCATCTGATGCTGTGAACACCAAATATCAACCTTCAGTGGAATGTCAGACTATGGCTGCTACCAATGAAAAGCTGAAAGAGAAAGAGCTTACTATTGAAGGTGGTGCCATTAGCATATCAAGTGTGTACTCAAAAGGGTTGTTGCATACGCTTACTCATGCATTGCAAAGTTCAGGGGTGGATTTGTCACAGGCTAGCATCTCAGTGCAAATTGAACTTGGTAAACAAGCTAACATCAGACCAACTGTACCAGTGTCAATGTGTGGTGCTAAGGATGGTGAAGTACATTCTAACAATCAAAAGATGATGCGCTCTAGAGTTGCCAGCTCTGGGAAGTCTGACCAAGCAGTTAAGAAGCTAAAGACATGCAGAAGTTAA 1680 0.4393 MELPQARPLGTEGRKPTHDFLSLYSNSTAQQDPRPSSQGSYLKTHDFLQPLERLETKTSAKEEATDEISSAVQKPPTSVEHLLPGGIGTYSISHISYVNNNQRVPKPESSLFVRQATSTDRNDDNSNCSSYTSSGFTLWEESSGKRGKTGKENNAGEKPTLGESAAKLGQWTSTERTSQSFSNNRHSSFSSRSSSQTTGQKNQSFIEMMKSARDSAPDEVLENEETFFLKKEPSNTQRELRVKVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWSNEPEKLMPWQRNNDKPAENFQPRATDNGSSPSPTLLFASKVDEKNITISPTIPGSTQNLESGLSTATTSKTMDHQAGIMNNKAFPIPIPSQLNFFTPTQIGGPGGAVPQLTHRSASDAVNTKYQPSVECQTMAATNEKLKEKELTIEGGAISISSVYSKGLLHTLTHALQSSGVDLSQASISVQIELGKQANIRPTVPVSMCGAKDGEVHSNNQKMMRSRVASSGKSDQAVKKLKTCRS 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02054 559 PANTHER TRANSCRIPTION FACTOR BIM1 1 556 - -
Cca11g02054 559 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 556 IPR044295 GO:0003700|GO:0006351|GO:0046983
Cca11g02054 559 MobiDBLite consensus disorder prediction 1 79 - -
Cca11g02054 559 MobiDBLite consensus disorder prediction 323 355 - -
Cca11g02054 559 MobiDBLite consensus disorder prediction 20 44 - -
Cca11g02054 559 MobiDBLite consensus disorder prediction 334 355 - -
Cca11g02054 559 Gene3D - 253 326 IPR036638 GO:0046983
Cca11g02054 559 SMART finulus 261 311 IPR011598 GO:0046983
Cca11g02054 559 MobiDBLite consensus disorder prediction 139 202 - -
Cca11g02054 559 MobiDBLite consensus disorder prediction 539 559 - -
Cca11g02054 559 CDD bHLH_AtBIM_like 254 330 - -
Cca11g02054 559 MobiDBLite consensus disorder prediction 166 202 - -
Cca11g02054 559 MobiDBLite consensus disorder prediction 368 387 - -
Cca11g02054 559 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 255 305 IPR011598 GO:0046983
Cca11g02054 559 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 253 326 IPR036638 GO:0046983
Cca11g02054 559 MobiDBLite consensus disorder prediction 48 68 - -
Cca11g02054 559 MobiDBLite consensus disorder prediction 226 270 - -
Cca11g02054 559 Pfam Helix-loop-helix DNA-binding domain 257 306 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02054 Cca-Chr11 46110168 46120306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02054 1 511 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 48.619 6.40e-128 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca11g02054 HLH 4.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02054 - - gmx:100808016 962.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02054 11 46110168 46120306 Cca11g02054 11 46110168 46120306 ECH