LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca11g02043	atgggaagagggagggttgaactgaagaggatagagaacaaaattaacaggcaagtcacatttgctaagaggagaaatgggttgctcaagaaggcttatgagctctcagtactttgtgatgctgaggttgccctcatcatcttctctaaccgtggcaagctttatgagttcagcagcacctcaagTATGATGAAAACACTGGAGAAGTACCAGAAGTACAGTTACAGTGCACTGGAGACCACCAGACCAATCAACGACACTCAGAACTACCAGGAATATTTGAGATTAAAAGCAAGGGTAGAAGTCTTGCAACGCTCGCAAAGGAACCTACTCGGGGAAGATCTTGCCCAAATGAATACATCTGAGCTCGAGCAGCTTGAGAATCAACTGGAGTCAGCACTCAGAAATATTAGGTCAACAAAGACTCAATTCATGCTTGACCAGCTTGCTGATCTTCATCACCGGGAAACTATGCTTGTTGAAACTAATAATGTATTAAGGAACAAGTTGGAAGAAACTAATAACTCACAAGTTCCAGTAAGTGTGGGTTTGGAGGCAGGAGCAGGAGGACCTAACATCCACTACACCAACTTTCCACCTCAATCAGATGGGTTCTTCCAGCCACTGGGAGTGAATCCCAACTTGCAAATTGGATACAATCAGAGTGGTCCTGAGGATGCAAACGTTGGAGCTTCATCATTAAGTATGCATGGATTCGCCTCTGGGTGGATGCTTTGA	738	0.332	MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSMMKTLEKYQKYSYSALETTRPINDTQNYQEYLRLKARVEVLQRSQRNLLGEDLAQMNTSELEQLENQLESALRNIRSTKTQFMLDQLADLHHRETMLVETNNVLRNKLEETNNSQVPVSVGLEAGAGGPNIHYTNFPPQSDGFFQPLGVNPNLQIGYNQSGPEDANVGASSLSMHGFASGWML	245

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca11g02043	245	Pfam	K-box region	86	170	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Cca11g02043	245	ProSiteProfiles	K-box domain profile.	86	176	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Cca11g02043	245	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	231	-	-
	Cca11g02043	245	PANTHER	DEVELOPMENTAL PROTEIN SEPALLATA 1	1	231	-	-
	Cca11g02043	245	CDD	MADS_MEF2_like	2	78	IPR033896	GO:0000977\|GO:0045944
	Cca11g02043	245	SUPERFAMILY	SRF-like	2	80	IPR036879	GO:0003677\|GO:0046983
	Cca11g02043	245	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Cca11g02043	245	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Cca11g02043	245	Coils	Coil	116	143	-	-
	Cca11g02043	245	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Cca11g02043	245	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Cca11g02043	245	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Cca11g02043	245	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Cca11g02043	245	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Cca11g02043	245	Gene3D	-	13	83	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca11g02043	Cca-Chr11	45993038	45999716	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca11g02043	1	218	MADS-box Gene Family	AT5G15800	61.991	2.32e-88	260

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Cca11g02043		K-box	1.1e-26	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca11g02043	K09264		-	gmx:100797819	431.795

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca03g00684	03	12518303	12530873	Cca11g02043	11	45993038	45999716	ECH
	Cca07g02282	07	51330477	51337703	Cca11g02043	11	45993038	45999716	ECH
	Cca09g00339	09	7947251	7954547	Cca11g02043	11	45993038	45999716	ECH
	Cca11g02043	11	45993038	45999716	Cca11g02043	11	45993038	45999716	ECH