Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02042 ATGGAACCTTGGAGCTATGTTCCTGAAGAAAAGGAGTGTGTCTCCAATGAGGGACTCTCGTCTCCCAACACTCTCGGGAGGAACAAAAATTCTTTCTTGGGCTGGGAACTCAAAACCCCATGTGGTTTTCCCAACGACATGTTGGGTTTGGGTCAGCACAGCATTGAGAATCAAGGTTTTGAGGAATTGGGTCTTCCCGAAATGTTGGGGAAACAGCTGTCCGATGATCTAATTGGGAGTGTTCAAAGTAGAAAGGTGGATGGTAGACAACAACACAGTGACAGAATCACTAGTACTGTTGTGGATACCCCAAGTGGGTTTTCTCAAAGAGGGTACTCAAATTCTAAGCTTTCATACTCAAATTCCCTCATTGATTTGAAACTGGGTCGATTTGCTGACCATGGAGATGCCCCTGATCTGGGGTTTTCCAAAGTTTTGTCTTCTGAGTCATCAACGCCTCCTAAGAGAGTGAGAGCTTCTGGGCTACAATCTCAGACGGCTTATTGCCAAGTCTATGGCTGTAACAAGGATCTCAGCTCTTGTAAGGATTACCACAAGAGACACAAGGTGTGTGAAGTCCACTCCAAGACTGCCACTGTTATAGTCAATGGCATTGAGCAGAGGTTTTGCCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAACGAAGTTGCCGTAAGCGCCTTGCAGGGCATAATGAGCGAAGAAGAAAACCACAAATGGGTATTCACTCCGGAAAATCTGGAAGGTTGCTTCAGCCATGCGGGGATAGCAGATTTCAGGGAAACATGCTAACATCATCTTTTATTCGCCCAGAGATGCTTCCTAGTGGCATCATGCATTCGGATAAATATGGTGTGAATGGCTTCTGGAGACCTATCAAAGCAGAACATGGGGCTGGTTTTAGGCATCTTTCTTCTATGCCTATAACCAACGGACATCCTCAGTCAAAATCTTTATTTCCATCATATAACGAAAAACAATTTCCTTTTCTTCATGAAAATGGTGCTACATCCACCGCTGGAGGCATCTTCTGTGAGAGCAATAACCACTATCCACATGCTCTTGGAGCCCAAAATTCTGGGTTGAGACCACTATTCCAGGACACAGTAGGAAATGAGGACTTCAATGTTTTTGATACAACATCAACTGTTCAAGGATTGTCGGGGATTTCAGACTCTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAAAACTCTTCAAGTCAATCATCAGGAATTCCCTTGGCTCATTCCTTGGTTATTCCAAGCAGTCATAACCATCACTACAACATTAGTCAGGTCTCTGGAAAGATAGGAATAAGCTCACAGACTTCTTCAAGCCGAGTGTCCAATAGTTTTCCATCAGAACTGAATCATGCAGATGGAAGTCATCTCAGTCCTGTACTAATATCAGACAATAATGATATTGTAAACTTTGATATTGCAGATGGTATCTTCCAAGGTTCAGATTTCGTGAATGTGAAAGATCGTCTTTCCTGTGAAGATGGTGCAACCATTAACTTGTTACAATTGTCATCACAGCTTCAGCGAGTTGAGCATGACAGACAATCCCTGCAGGTGAAGCAAGAGAATGATTCTTGTTGCACTCTGCGGATTACATGA 1638 0.4347 MEPWSYVPEEKECVSNEGLSSPNTLGRNKNSFLGWELKTPCGFPNDMLGLGQHSIENQGFEELGLPEMLGKQLSDDLIGSVQSRKVDGRQQHSDRITSTVVDTPSGFSQRGYSNSKLSYSNSLIDLKLGRFADHGDAPDLGFSKVLSSESSTPPKRVRASGLQSQTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTATVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQMGIHSGKSGRLLQPCGDSRFQGNMLTSSFIRPEMLPSGIMHSDKYGVNGFWRPIKAEHGAGFRHLSSMPITNGHPQSKSLFPSYNEKQFPFLHENGATSTAGGIFCESNNHYPHALGAQNSGLRPLFQDTVGNEDFNVFDTTSTVQGLSGISDSCALSLLSSQSQNSSSQSSGIPLAHSLVIPSSHNHHYNISQVSGKIGISSQTSSSRVSNSFPSELNHADGSHLSPVLISDNNDIVNFDIADGIFQGSDFVNVKDRLSCEDGATINLLQLSSQLQRVEHDRQSLQVKQENDSCCTLRIT 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02042 545 MobiDBLite consensus disorder prediction 93 107 - -
Cca11g02042 545 ProSiteProfiles Zinc finger SBP-type profile. 166 243 IPR004333 GO:0003677
Cca11g02042 545 PANTHER 1 PROTEIN, PUTATIVE-RELATED 42 545 - -
Cca11g02042 545 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 42 545 IPR044817 GO:0003677
Cca11g02042 545 Gene3D - 159 230 IPR036893 GO:0003677|GO:0005634
Cca11g02042 545 MobiDBLite consensus disorder prediction 84 107 - -
Cca11g02042 545 Coils Coil 513 533 - -
Cca11g02042 545 Pfam SBP domain 169 242 IPR004333 GO:0003677
Cca11g02042 545 MobiDBLite consensus disorder prediction 233 252 - -
Cca11g02042 545 SUPERFAMILY SBT domain 167 247 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02042 Cca-Chr11 45927585 45932438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02042 124 285 SBP-box Gene Family AT1G69170 56.790 1.03e-53 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Cca11g02042 SBP 4.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02042 - - gmx:100817547 924.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00681 03 12391052 12395236 Cca11g02042 11 45927585 45932438 ECH
Cca11g02042 11 45927585 45932438 Cca11g02042 11 45927585 45932438 ECH