Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02041 ATGGATTCTCTGTGGTTATCAACCTCTGGATCTGTTGTTCCTCGGGGTGGCTTCATGGTGATTTTATTGTTGTCACTGCTCTTGTGCACTACATTCACTTCTACGGAAGCCTATGATGCACTTGATCCAACTGGCAATATTACAATCAAATGGGATATCATAAATTGGACTCCAGACGGCTATGTTGCTGTTGTAACAATGTACAACTTTCAACAGTATCGTCATATCCAGTCTCCTGGATGGATACTAGGGTGGACATGGGCCAAAAAGGAAGTAATTTGGAATGTAATGGGAGGCCAAACCACAGAGCAAGGGGACTGTTCAAGGTTCAAAGGGAACATTCCACACTGTTGTAAGAAGGATCCAACCGTAGTGGATTTACTGCCTGGAACTCCTTACAACCAGCAGATTGCGAATTGTTGCACAGGGGGAGTCTTGAGTTCATGGGCCCAGGACCCTGAAAATGCAATTAGTTCATTTCAACTTAGTGTTGGTTCAGCAGGAACAACTAACAAAACAGTCAAACTGCCAAAAAATTTCACCCTGAAAGCACCAGGTCCTGGTTATACCTGTGGCCCTGCAAAGATTGTGAAGCCAACTAAATTTATTACCAAAGACAAGAGGAGAACCACTCAGGCATTGATGACCTGGAATGTTACCTGTACGTATTCTCAATTCCTGGCTCAGAAGACACCAACTTGCTGCGTTTCCCTCTCATCCTTCTATAACAGCACAATAGTAAACTGCCCTACCTGCACCTGTGGTTGCCAAAATAAAACAGATCCTGGCAGCTGTGTAGATCCCAATTCCCCACACTTGGCTTCAGTTGTGTCACCACCAGGCAAAGCTATAAACACACCTTTGGTCCGGTGCACCAGCCACATGTGTCCTATTCGAGTTCATTGGCATGTGAAGCTTCAATATAAGGAGTACTGGAGGATCAAGATCACAATCACAAATTTCAACTACAGAATGAACTATTCACAATGGAACCTTGTTGTGCAGCACCCAAACTTTGATAATGTAACCCAGGTTTTCAGCTTTAATTACAAGCCACTAACTCCTTATGTGGGCTTAAATGATACTGGTATGCTGTGGGGAGTCAAGTTCTATAATGATTTACCTAGTTCAGCAGGACCCGTTGGGAATGTGCAGTCTGAGCTCTTATTCCGAAAGGACAAATCAACCTTTACATTTGATAAGGGATGGGCTTTCCCACGAAGAATTTATTTCAATGGAGATAACTGTGTAATGCCTCCTCCAGATGCCTACCCGTGGCTGCCAAATGCAAGTTCAAAAATAGTTATCTCTTTACTAAGTATAGTGCTGGGTACTTTAGCTTGTGTGGTAATCTTATTGACTTAA 1365 0.4322 MDSLWLSTSGSVVPRGGFMVILLLSLLLCTTFTSTEAYDALDPTGNITIKWDIINWTPDGYVAVVTMYNFQQYRHIQSPGWILGWTWAKKEVIWNVMGGQTTEQGDCSRFKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCTGGVLSSWAQDPENAISSFQLSVGSAGTTNKTVKLPKNFTLKAPGPGYTCGPAKIVKPTKFITKDKRRTTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNSTIVNCPTCTCGCQNKTDPGSCVDPNSPHLASVVSPPGKAINTPLVRCTSHMCPIRVHWHVKLQYKEYWRIKITITNFNYRMNYSQWNLVVQHPNFDNVTQVFSFNYKPLTPYVGLNDTGMLWGVKFYNDLPSSAGPVGNVQSELLFRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSKIVISLLSIVLGTLACVVILLT 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02041 454 PANTHER PROTEIN COBRA 14 452 IPR006918 GO:0010215|GO:0031225
Cca11g02041 454 PANTHER COBRA-LIKE PROTEIN 14 452 - -
Cca11g02041 454 PIRSF COBRA 10 454 IPR006918 GO:0010215|GO:0031225
Cca11g02041 454 Pfam COBRA-like protein 61 224 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02041 Cca-Chr11 45920714 45924567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02041 4 451 COBRA Gene Family AT3G02210 72.829 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02041 - - gmx:100811581 910.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02041 11 45920714 45924567 Cca11g02041 11 45920714 45924567 ECH
Cca11g02041 11 45920714 45924567 Cca03g00678 03 12342726 12346933 PCT