Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02030 ATGAAATCAAGGAACGATGAGATAATTAGTAAGATGATGGATATTGAAAGTTCAAGTAAAGGTCATGAAGCCAGTACACAAGAAGAGGGCAATAACATTAAAACTGAGAAGTTCTTGAAGGCACCCTCCACCTCAAGGCAATGGTCAGCATTCAGAAATCCAAGAATTGTGCGAGTCTCACGTACTTTGGGAGGAAAAGATAGACACAGCAAGGTTTGCACCATTAGGGGACTGAGGGACCGAAGGATTAGACTGTCTGTACCCACAGCAGTTCAGTTATATGATCTTCAAGACAGGCTTGGACTCAACCAACCTAGCAAAGCGGTAGATTGGTTGCTTGAAGCCACCAAATCTGATATTGATAAACTACCACCACTTCAAATTCCTCATTGTTTTACTCACCAACAAACCCTACTTCCAGGTAACTCTCAGTTTTCTCTTGGACCCTTCTATGATCCTGATTCCAATTTTAGCAAGGATGGGGGAAATCAAAACCTCATGGCAAAGTCAAGGTATTGGAATATAGATTCACTAAATGGTAAGGAGTTAGGTGAAAGTGTGTCAATCTTCCAAAAAGGCAAGAGCTGGATCAAAAGAAGTGAACAAGAAAATCAAGATGGAATCTCAATTGGTGGTACTCATAATAGAGAGTATTCTTCAGCTCATAAGCTCTTCCCCATTGGGACTACAAACTCTTCTTTACTTGGTAATTTTCTAAACAATGGCATGACACATAACTCCTACCACCATTCTGAGCCTTCAAGTCTATCTTTGTCCCACTTTGGAAGCCATGGATTGTTTCCTTCTCATCCTAGCAGTGGCAGTGGTGAGCAATTTTCATCTTCTAATTTCTCAGGAGCATCTGGTCCACAGTTACTTTTTTGTCCACCTTCTGCTACACCATCTGCTTTTTACTCAGTGGAAAGTGATCCAAGACAATCCAACATCTTGAGCTCAAGTTCCCAAGTCATGATGCCTCATCCTCTCATTCATCCAACTAATTCACCTCTTAGACGCCTTCCAACATCATTTAGTTCCAAGCTCCTTGGTTCTGATAATAATGATCGGAGCCAAGATAAAGGTAGTACTCGTTCTTGA 1098 0.4126 MKSRNDEIISKMMDIESSSKGHEASTQEEGNNIKTEKFLKAPSTSRQWSAFRNPRIVRVSRTLGGKDRHSKVCTIRGLRDRRIRLSVPTAVQLYDLQDRLGLNQPSKAVDWLLEATKSDIDKLPPLQIPHCFTHQQTLLPGNSQFSLGPFYDPDSNFSKDGGNQNLMAKSRYWNIDSLNGKELGESVSIFQKGKSWIKRSEQENQDGISIGGTHNREYSSAHKLFPIGTTNSSLLGNFLNNGMTHNSYHHSEPSSLSLSHFGSHGLFPSHPSSGSGEQFSSSNFSGASGPQLLFCPPSATPSAFYSVESDPRQSNILSSSSQVMMPHPLIHPTNSPLRRLPTSFSSKLLGSDNNDRSQDKGSTRS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02030 365 MobiDBLite consensus disorder prediction 321 365 - -
Cca11g02030 365 Pfam TCP family transcription factor 65 146 IPR017887 -
Cca11g02030 365 MobiDBLite consensus disorder prediction 1 30 - -
Cca11g02030 365 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 15 360 IPR005333 GO:0003700
Cca11g02030 365 ProSiteProfiles TCP domain profile. 65 123 IPR017887 -
Cca11g02030 365 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 15 360 - -
Cca11g02030 365 MobiDBLite consensus disorder prediction 336 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02030 Cca-Chr11 45755233 45757256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02030 49 218 TCP Transcription Factor Family AT5G60970 53.631 1.50e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Cca11g02030 TCP 4.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02030 - - pvu:PHAVU_003G183700g 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02030 11 45755233 45757256 Cca03g00665 03 12094189 12095968 PCT